#!/bin/bash -Ceuo pipefail
bgzip  --threads 1 -c  HCC1395_BL_custom.ann_snpEff.ann.vcf > HCC1395_BL_custom.ann_snpEff.ann.vcf.gz
tabix --threads 1  HCC1395_BL_custom.ann_snpEff.ann.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS