File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/d770678025c06e686e0884df7ce221/.command.sh
Size
390 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_BGZIP_TABIX (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
bgzip -c HCC1395_tumor_vs_HCC1395_BL_somatic.vcf > HCC1395_tumor_vs_HCC1395_BL_somatic.vcf.gz
tabix -p vcf HCC1395_tumor_vs_HCC1395_BL_somatic.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_BGZIP_TABIX":
    htslib: $(tabix --version | head -1 | sed 's/tabix (htslib) //')
END_VERSIONS