.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (HCC1395_tumor_vs_HCC1395_BL)

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/6e752d4f779b1fd4e3df12900f30ad/.command.err
Size: 142 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Checking the headers and starting positions of 2 files
ls: HCC1395_tumor_vs_HCC1395_BL.snv_indel.merged.vcf.gz.csi: No such file or directory