.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/a4f5c26b74015c788ab972d924e413/.command.log
Size: 819 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:TMB_SNV_INDEL (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/66891b03fc90e83151fc7ab3e6bcc5/HCC1395_tumor_vs_HCC1395_BL.snv_indel.filtered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/a4f5c26b74015c788ab972d924e413/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/a4f5c26b74015c788ab972d924e413/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/bed/xgen-exome-hyb-panel-v2-targets-hg38_short.mrg_chr21.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/66891b03fc90e83151fc7ab3e6bcc5/HCC1395_tumor_vs_HCC1395_BL.snv_indel.filtered.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

TMB region size: 341703 bp (0.34 MB)
Total: 187, In BED: 70, PASS: 3, TMB_VARIANT: 2, Score: 5.853