Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/aa32b581e1985f130422d83d2d0827/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/8a4e165504df4940a1dd9c86ea6907/HCC1395_tumor.recalibrated.somatic.call.cns
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/aa32b581e1985f130422d83d2d0827/.command.run
==> STAGING COMPLETE (3 inputs)

Matplotlib created a temporary config/cache directory at /tmp/matplotlib-pjjp0890 because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories
No chrX found in sample; is the input truncated?
Treating sample HCC1395_tumor.recalibrated.somatic.call as male
Wrote HCC1395_tumor_vs_HCC1395_BL.cnvcall.vcf
Matplotlib created a temporary config/cache directory at /tmp/matplotlib-_4hcpf3p because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories