cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample HCC1395_BL --max_event_count 5 -v HCC1395_tumor_vs_HCC1395_BL.tnseq.vcf.gz --contamination HCC1395_tumor_vs_HCC1395_BL.tnseq.contamination_data.tsv --tumor_segments HCC1395_tumor_vs_HCC1395_BL.tnseq.segments --orientation_priors HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:231000001, elapsed 0.1s, est remaining 2.1s, peak mem 822MB, user 0.1s, sys 3.6s, output queue size 151
progress 10% @chr1:129000001, elapsed 0.2s, est remaining 2.0s, peak mem 822MB, user 0.3s, sys 12.5s, output queue size 312
progress 15% @chr2:51000001, elapsed 0.3s, est remaining 1.9s, peak mem 822MB, user 0.5s, sys 32.7s, output queue size 474
progress 20% @chr4:176000001, elapsed 0.4s, est remaining 1.7s, peak mem 822MB, user 0.7s, sys 52.3s, output queue size 635
progress 25% @chr6:58000001, elapsed 0.5s, est remaining 1.5s, peak mem 822MB, user 0.9s, sys 69.6s, output queue size 692
progress 30% @chr4:120000001, elapsed 0.6s, est remaining 1.4s, peak mem 822MB, user 1.2s, sys 85.2s, output queue size 854
progress 35% @chr7:127000001, elapsed 0.7s, est remaining 1.3s, peak mem 822MB, user 1.4s, sys 101.1s, output queue size 1015
progress 40% @chr8:103000001, elapsed 0.8s, est remaining 1.2s, peak mem 822MB, user 1.6s, sys 117.7s, output queue size 1176
progress 45% @chr9:91000001, elapsed 0.9s, est remaining 1.1s, peak mem 822MB, user 1.8s, sys 133.9s, output queue size 1338
progress 50% @chr11:29000001, elapsed 1.0s, est remaining 1.0s, peak mem 822MB, user 2.0s, sys 150.4s, output queue size 1500
progress 55% @chr12:19000001, elapsed 1.1s, est remaining 0.9s, peak mem 822MB, user 2.1s, sys 167.2s, output queue size 1661
progress 60% @chr13:44000001, elapsed 1.2s, est remaining 0.8s, peak mem 822MB, user 2.2s, sys 183.3s, output queue size 1824
progress 65% @chr14:66000001, elapsed 1.3s, est remaining 0.7s, peak mem 822MB, user 2.5s, sys 199.5s, output queue size 1985
progress 70% @chr16:44000001, elapsed 1.3s, est remaining 0.6s, peak mem 822MB, user 2.6s, sys 216.2s, output queue size 2146
progress 75% @chr16:56000001, elapsed 1.4s, est remaining 0.5s, peak mem 822MB, user 2.8s, sys 232.6s, output queue size 2308
progress 80% @chr18:76000001, elapsed 1.5s, est remaining 0.4s, peak mem 822MB, user 3.1s, sys 249.2s, output queue size 2470
progress 85% @chrX:17000001, elapsed 1.6s, est remaining 0.3s, peak mem 822MB, user 3.3s, sys 265.0s, output queue size 2643
progress 90% @chr8_KI270817v1_alt:1, elapsed 1.7s, est remaining 0.2s, peak mem 822MB, user 3.6s, sys 279.2s, output queue size 3018
progress 95% @chrY:40000001, elapsed 1.7s, est remaining 0.1s, peak mem 822MB, user 3.8s, sys 295.5s, output queue size 3487
progress 100% @HLA-DRB1*11:01:02:1, elapsed 1.9s, est remaining 0.0s, peak mem 822MB, user 4.2s, sys 308.7s, output queue size 6296
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 71258
output file size: 60122
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 741 calls 0.000 user 0.000 sys 0.023 real
"predict_filter": 247 calls 0.007 user 0.009 sys 0.040 real
advance: 3219322 calls 0.383 user 145.885 sys 186.299 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.004 user 0.003 sys 2.162 real
fetch_ref: 648 calls 0.008 user 0.012 sys 0.103 real
idle: 20633 calls 0.778 user 1.219 sys 844.134 real
init: 1 calls 0.413 user 0.118 sys 0.882 real
overall: 862138368 mem 6.101 user 330.594 sys 4.642 real