File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/f5fa977526f491aa7f3821c75553c4/.command.log
Size
2.2 KB
Task
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/cc5a9a44f1d2eec9eef7a637ae30fe/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/fd25ef57411f17837f17f2e2071f60/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/637340b4cf12d2753538c96bba8488/Sig_18_Blood.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/18a50ab8786f7158542adf42829ea0/custom_Sig_18_tumor_normal.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/219d1434cccf096e3d8c1e6a6d26bc/ngscheckmate_all.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/803f171e4dd7fa9950099d4c4e86ae/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/04679c38fea3b329d0580d04d8ab10/Sig_18_tissue_vs_Sig_18_Blood.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/38f1865ab0465429659d443d95f221/Sig_18_Blood.deconfliction_audit.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/819a5c2f803ba6951ab900f6166859/HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/d824a5e28183b268885605c39d68de/HCC1395_tumor_vs_HCC1395_BL.conpair.contamination.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/9f7b05e3ae9f5774ab39e9dabb96cc/HCC1395_BL.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/f5fa977526f491aa7f3821c75553c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/f5fa977526f491aa7f3821c75553c4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/e491d0dc39ee39eb8ed8e93b27a5c9/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/cb8dd75da91c048989bcf56c765d8f/HCC1395_BL.deconfliction_audit.tsv
==> STAGING COMPLETE (15 inputs)

Variant QC aggregation complete: 3 pairs, 2 samples
Output: variant_qc.json