File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/e389beed18090c24b0d0fe9092b72b/.command.log
Size
1004 bytes
Task
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_REPEATMASKER:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/repeatmasker_grch38.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/e389beed18090c24b0d0fe9092b72b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/repeatmasker_grch38.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/e389beed18090c24b0d0fe9092b72b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/repeatmasker_header.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/49715ff6c089f86528ba93061b6f6f/custom_Sig_18_tumor_normal.strelka.somatic_indels.vcf.gz
==> STAGING COMPLETE (6 inputs)

ls: *.vcf: No such file or directory
ls: *.bcf: No such file or directory
ls: *.bcf.gz: No such file or directory