.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (Sig_18_Blood)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/a81bf501939e14a74d3699579bd672/.command.log
Size: 792 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (Sig_18_Blood)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/1a58621d60df07a492b2a030fa0c74/Sig_18_Blood.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/a81bf501939e14a74d3699579bd672/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/a81bf501939e14a74d3699579bd672/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/116a6a7d8248e6caa9797174185863/Sig_18_Blood.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: Sig_18_Blood.mpileup.gz
Found 28 positions with indel observations
Annotating VCF: Sig_18_Blood.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'Sig_18_Blood.haplotyper.split.vcf.gz'
Output written to: Sig_18_Blood.entropy.vcf