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AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume d09c9333-1fb2-4265-8d3f-a997486c985b -name gui-test-8
Error Report
Error executing process > 'BWA_MEM (three)'
Caused by:
OOMKilled
Command executed:
set -euo pipefail
RG=$(printf '@RG\tID:%s\tSM:%s\tPL:ILLUMINA\tLB:%s' 'three' 'three' 'three')
bwa-mem2 mem -t 4 -K 50000000 -R "$RG" 'hg38.fa' 'nf_gui_test_four.1.fastp.fq.gz' 'nf_gui_test_four.2.fastp.fq.gz' \
| samtools sort -@4 -m 768M --no-PG -o three.sorted.bam -
samtools index -@ 4 three.sorted.bam three.sorted.bam.bai
Command exit status:
137
Command output:
(empty)
Work dir:
s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/17/25b49968da4059a0aeb74015875063
Container:
644019535899.dkr.ecr.us-west-2.amazonaws.com/lcgp/rmdupes:bwa_mem-0.0.0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / fsdx-dev
- Session ID
- d09c9333-1fb2-4265-8d3f-a997486c985b
- Source
- /code/main.nf
- Work Dir
- s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work
- Submitted By
- aschultz (['gui-test'])
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.08
- Outputs
- 34 KB
- Started
- Jun 08, 2026 12:18 PM
- Completed
- Jun 08, 2026 12:26 PM
- Duration
- 7m 22s
- Post-workflow Transfer
- 0s
- Exit Status
- 137
- Peak Tasks / CPU / Mem
- 4 / 16 / 16.0 GB