File Info

Filename
.command.log
Full Path
s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/de/45ea01ec0d91b007bfc63ed0f10d95/.command.log
Size
1.5 KB
Task
BWA_MEM (four)
Attempt

Content

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  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/de/45ea01ec0d91b007bfc63ed0f10d95/.command.sh
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.0123
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.fai
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.bwt.2bit.64
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.pac
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/a6/8ae41b8627cc155e9bb68a91c50a75/nf_gui_test_two.2.fastp.fq.gz
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.ann
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/de/45ea01ec0d91b007bfc63ed0f10d95/.command.run
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/references/hg38.fa.amb
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/a6/8ae41b8627cc155e9bb68a91c50a75/nf_gui_test_two.1.fastp.fq.gz
==> STAGING COMPLETE (11 inputs)

Looking to launch executable "/opt/conda/bin/bwa-mem2.avx512bw", simd = .avx512bw
Launching executable "/opt/conda/bin/bwa-mem2.avx512bw"
-----------------------------
Executing in AVX512 mode!!
-----------------------------
* SA compression enabled with xfactor: 8
* Ref file: hg38.fa
* Entering FMI_search
* Index file found. Loading index from hg38.fa.bwt.2bit.64
* Reference seq len for bi-index = 6418572211