Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/ec/d673ee2ab685546e417b2c4a0238d7/.command.sh
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/ec/d673ee2ab685546e417b2c4a0238d7/.command.run
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_three.read1.fastq.gz
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_three.read2.fastq.gz
==> STAGING COMPLETE (4 inputs)

Read1 before filtering:
total reads: 873162
total bases: 131847462
Q20 bases: 128636622(97.5647%)
Q30 bases: 123346744(93.5526%)
Q40 bases: 0(0%)

Read2 before filtering:
total reads: 873162
total bases: 131847462
Q20 bases: 128634525(97.5631%)
Q30 bases: 123347261(93.553%)
Q40 bases: 0(0%)

Read1 after filtering:
total reads: 871804
total bases: 114359507
Q20 bases: 111573988(97.5642%)
Q30 bases: 106985631(93.552%)
Q40 bases: 0(0%)

Read2 after filtering:
total reads: 871804
total bases: 114369597
Q20 bases: 111582137(97.5628%)
Q30 bases: 106996183(93.553%)
Q40 bases: 0(0%)

Filtering result:
reads passed filter: 1743608
reads failed due to low quality: 30
reads failed due to too many N: 0
reads failed due to too short: 2686
reads failed due to low complexity: 0
reads failed due to adapter dimer: 0
reads with adapter trimmed: 91176
bases trimmed due to adapters: 368196

Duplication rate: 74.1957%

Insert size peak (evaluated by paired-end reads): 151

JSON report: nf_gui_test_three.fastp.json
HTML report: nf_gui_test_three.fastp.html

fastp -w 4 -i nf_gui_test_three.read1.fastq.gz -I nf_gui_test_three.read2.fastq.gz -o nf_gui_test_three.1.fastp.fq.gz -O nf_gui_test_three.2.fastp.fq.gz -b 141 -B 141 -g -y --html nf_gui_test_three.fastp.html --json nf_gui_test_three.fastp.json 
fastp v1.3.3, time used: 5 seconds