Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/ce/8a51da604c1ccfd57a4f883b3b956f/.command.sh
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/ce/8a51da604c1ccfd57a4f883b3b956f/.command.run
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_one.read1.fastq.gz
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_one.read2.fastq.gz
==> STAGING COMPLETE (4 inputs)

Read1 before filtering:
total reads: 881345
total bases: 133083095
Q20 bases: 129840240(97.5633%)
Q30 bases: 124499730(93.5504%)
Q40 bases: 0(0%)

Read2 before filtering:
total reads: 881345
total bases: 133083095
Q20 bases: 129838628(97.5621%)
Q30 bases: 124499704(93.5504%)
Q40 bases: 0(0%)

Read1 after filtering:
total reads: 880072
total bases: 115673372
Q20 bases: 112854785(97.5633%)
Q30 bases: 108213066(93.5505%)
Q40 bases: 0(0%)

Read2 after filtering:
total reads: 880072
total bases: 115661192
Q20 bases: 112840431(97.5612%)
Q30 bases: 108201117(93.5501%)
Q40 bases: 0(0%)

Filtering result:
reads passed filter: 1760144
reads failed due to low quality: 10
reads failed due to too many N: 0
reads failed due to too short: 2524
reads failed due to low complexity: 12
reads failed due to adapter dimer: 0
reads with adapter trimmed: 93296
bases trimmed due to adapters: 373852

Duplication rate: 74.4172%

Insert size peak (evaluated by paired-end reads): 151

JSON report: nf_gui_test_one.fastp.json
HTML report: nf_gui_test_one.fastp.html

fastp -w 4 -i nf_gui_test_one.read1.fastq.gz -I nf_gui_test_one.read2.fastq.gz -o nf_gui_test_one.1.fastp.fq.gz -O nf_gui_test_one.2.fastp.fq.gz -b 141 -B 141 -g -y --html nf_gui_test_one.fastp.html --json nf_gui_test_one.fastp.json 
fastp v1.3.3, time used: 6 seconds