.command.sh - Workdir - FASTP (nf_gui_test_one)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/ce/8a51da604c1ccfd57a4f883b3b956f/.command.sh
Size: 306 bytes
Task: FASTP (nf_gui_test_one)
Attempt

Content

#!/bin/bash -Ceuo pipefail
set -euo pipefail
fastp -w 4 -i 'nf_gui_test_one.read1.fastq.gz' -I 'nf_gui_test_one.read2.fastq.gz'         -o nf_gui_test_one.1.fastp.fq.gz -O nf_gui_test_one.2.fastp.fq.gz         -b 141 -B 141 -g -y         --html nf_gui_test_one.fastp.html --json nf_gui_test_one.fastp.json