Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_four.read2.fastq.gz
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/d3/f6ee0ce994750a338381ae6c6c8240/.command.sh
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/d3/f6ee0ce994750a338381ae6c6c8240/.command.run
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_four.read1.fastq.gz
==> STAGING COMPLETE (4 inputs)

Read1 before filtering:
total reads: 877481
total bases: 132499631
Q20 bases: 129271711(97.5638%)
Q30 bases: 123954128(93.5505%)
Q40 bases: 0(0%)

Read2 before filtering:
total reads: 877481
total bases: 132499631
Q20 bases: 129271688(97.5638%)
Q30 bases: 123960274(93.5552%)
Q40 bases: 0(0%)

Read1 after filtering:
total reads: 875971
total bases: 114861617
Q20 bases: 112062866(97.5634%)
Q30 bases: 107453173(93.5501%)
Q40 bases: 0(0%)

Read2 after filtering:
total reads: 875971
total bases: 114856654
Q20 bases: 112058635(97.5639%)
Q30 bases: 107454360(93.5552%)
Q40 bases: 0(0%)

Filtering result:
reads passed filter: 1751942
reads failed due to low quality: 26
reads failed due to too many N: 0
reads failed due to too short: 2984
reads failed due to low complexity: 10
reads failed due to adapter dimer: 0
reads with adapter trimmed: 90180
bases trimmed due to adapters: 366560

Duplication rate: 74.3418%

Insert size peak (evaluated by paired-end reads): 151

JSON report: nf_gui_test_four.fastp.json
HTML report: nf_gui_test_four.fastp.html

fastp -w 4 -i nf_gui_test_four.read1.fastq.gz -I nf_gui_test_four.read2.fastq.gz -o nf_gui_test_four.1.fastp.fq.gz -O nf_gui_test_four.2.fastp.fq.gz -b 141 -B 141 -g -y --html nf_gui_test_four.fastp.html --json nf_gui_test_four.fastp.json 
fastp v1.3.3, time used: 5 seconds