/usr/local/lib64/python3.11/site-packages/numpy/_core/fromnumeric.py:54: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead.
  return bound(*args, **kwds)
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.baiThe index file is older than the data file: two.markdup.bam.bai

The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai
[W::hts_idx_load3] The index file is older than the data file: two.markdup.bam.bai