Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_two.read2.fastq.gz
  Downloading: s3://fsdx-algo-644019535899-us-west-2-an/aschultz/bf-gui-test/nf_gui_test_two.read1.fastq.gz
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/bc/e0c17aed6e49302b437a5ac30211d6/.command.sh
  Downloading: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/bc/e0c17aed6e49302b437a5ac30211d6/.command.run
==> STAGING COMPLETE (4 inputs)

Read1 before filtering:
total reads: 877423
total bases: 132490873
Q20 bases: 129262141(97.5631%)
Q30 bases: 123948822(93.5527%)
Q40 bases: 0(0%)

Read2 before filtering:
total reads: 877423
total bases: 132490873
Q20 bases: 129262387(97.5632%)
Q30 bases: 123949682(93.5534%)
Q40 bases: 0(0%)

Read1 after filtering:
total reads: 875933
total bases: 114905737
Q20 bases: 112106460(97.5638%)
Q30 bases: 107498429(93.5536%)
Q40 bases: 0(0%)

Read2 after filtering:
total reads: 875933
total bases: 114904324
Q20 bases: 112104472(97.5633%)
Q30 bases: 107497319(93.5538%)
Q40 bases: 0(0%)

Filtering result:
reads passed filter: 1751866
reads failed due to low quality: 10
reads failed due to too many N: 0
reads failed due to too short: 2950
reads failed due to low complexity: 20
reads failed due to adapter dimer: 0
reads with adapter trimmed: 90076
bases trimmed due to adapters: 367825

Duplication rate: 74.311%

Insert size peak (evaluated by paired-end reads): 151

JSON report: nf_gui_test_two.fastp.json
HTML report: nf_gui_test_two.fastp.html

fastp -w 4 -i nf_gui_test_two.read1.fastq.gz -I nf_gui_test_two.read2.fastq.gz -o nf_gui_test_two.1.fastp.fq.gz -O nf_gui_test_two.2.fastp.fq.gz -b 141 -B 141 -g -y --html nf_gui_test_two.fastp.html --json nf_gui_test_two.fastp.json 
fastp v1.3.3, time used: 4 seconds