.command.out - Workdir - TASTER_FREQ__2 (one.sorted.bam)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/d8/46024a9398808f36c95c4882dad2f1/.command.out
Size: 2.9 KB
Task: TASTER_FREQ__2 (one.sorted.bam)
Attempt
Content

[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: one.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
Done. Merging outputs