[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
[W::hts_idx_load3] The index file is older than the data file: four.sorted.bam.bai
[W::sam_hrecs_update_hashes] PG line with multiple ID tags. The first encountered was preferred - ID:bwa-mem2
[mpileup] 1 samples in 1 input files
[mpileup] Combined max depth is above 1M. Potential memory hog!
Done. Merging outputs