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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume f916282c-4b3e-4e62-8b38-dd424c0ee62d -name harmonize-tso500dna-exp0006-test
Error Report
Error executing process > 'NFCORE_HARMONIZE:HARMONIZE:TSO500_VAF_PLOT (869_B0C-T1-TDNA-1_HGJ2WDRX7_1)'
Caused by:
Process `NFCORE_HARMONIZE:HARMONIZE:TSO500_VAF_PLOT (869_B0C-T1-TDNA-1_HGJ2WDRX7_1)` terminated with an error exit status (1)
Command executed:
tso500_vaf_plot.py \
--tmb-trace 869_B0C-T1-TDNA-1_HGJ2WDRX7_1_dna_TMB_Trace.tsv \
--output 869_B0C-T1-TDNA-1_HGJ2WDRX7_1.vaf.png \
--sample-id 869_B0C-T1-TDNA-1_HGJ2WDRX7_1
cat <<-END_VERSIONS > versions.yml
"NFCORE_HARMONIZE:HARMONIZE:TSO500_VAF_PLOT":
python: $(python --version | sed 's/Python //')
tso500_vaf_plot: "1.0.0"
END_VERSIONS
Command exit status:
1
Command output:
(empty)
Command error:
Traceback (most recent call last):
File "/tmp/nxf.5OG3sWdkfM/nextflow-bin/tso500_vaf_plot.py", line 8, in <module>
import matplotlib
ModuleNotFoundError: No module named 'matplotlib'
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/f8d3a7f0a052d99d28282aaf8d26fa
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/pysam-pandas-python3:1.0.0
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- f916282c-4b3e-4e62-8b38-dd424c0ee62d
- Source
- /code/main.nf
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- s3://natera-platform-sandbox/platform-users/sgreer/harmonized_data/harmonize_tso500dna_exp0006_test
- Submitted By
- sgreer
- Resumed
- Yes
Cost and Runtime
- Status
- failed
- Cost
- $0.48
- Outputs
- 23 MB
- Started
- Feb 25, 2026 10:35 PM
- Completed
- Feb 25, 2026 10:37 PM
- Duration
- 1m 49s
- Post-workflow Transfer
- 2s
- Exit Status
- 1
- Peak Tasks / CPU / Mem
- 2 / 2 / 8.0 GB