File Info
- Filename
- 869_VZQ-T1-TDNA-1_A23WGJTLT4_1_vs_869_VZQ-N1-BDNA-1_A23FG3YLT4_1.sv.hmnz.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_dna/hmnz_cgp_dna_exp0034__70824045--20260606-020246/869_VZQ-T1-TDNA-1_A23WGJTLT4_1_vs_869_VZQ-N1-BDNA-1_A23FG3YLT4_1/variants/dna_fusions/869_VZQ-T1-TDNA-1_A23WGJTLT4_1_vs_869_VZQ-N1-BDNA-1_A23FG3YLT4_1.sv.hmnz.tsv
- Size
- 22.7 KB
- Workflow Run
- hmnz-cgp-dna-exp0034-20260606-020246
- Published
- Jun 05, 2026 7:05 PM
Content
View in new tab| sample | sv_id | sv_type | svtype_standard | chr1 | pos1 | chr2 | pos2 | gene1 | region1 | strand1 | gene2 | region2 | strand2 | qual | filter | svlen | imprecise | tumor_gt | tumor_pr | tumor_sr | mate_id |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:78390:78390:8:2:0 | DELETION | DEL | chr1 | 1049050 | chr1 | 1049168 | AGRN | INTRON:24 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -118 | no | . | 300,0 | 779,19 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:78426:78426:10:0:0 | DELETION | DEL | chr1 | 1296791 | chr1 | 1296853 | MIR6726 | INTERGENIC | . | SCNN1D | INTERGENIC | . | . | PASS | -62 | no | . | 20,0 | 113,101 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:78866:78866:0:0:0 | DELETION | DEL | chr1 | 7829912 | chr1 | 7829966 | PER3 | EXON:19 | . | ENSG00000236266 | INTERGENIC | . | . | PASS | -54 | no | . | 0,0 | 0,109 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:81918:81918:0:0:0 | DELETION | DEL | chr1 | 51840327 | chr1 | 51840378 | NRDC | EXON:2 | . | MIR761 | INTERGENIC | . | . | PASS | -51 | no | . | 88,0 | 454,16 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:83168:83168:12:1:0 | DELETION | DEL | chr1 | 109924006 | chr1 | 109924233 | CSF1 | EXON:6 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -227 | no | . | 1230,0 | 2046,14 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:84097:84097:2:3:0 | DELETION | DEL | chr1 | 152108207 | chr1 | 152108966 | TCHH | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -759 | no | . | 1543,27 | 1820,52 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:84100:84100:5:5:0 | DELETION | DEL | chr1 | 152155413 | chr1 | 152156205 | RPTN | EXON:3 | . | PUDPP2 | EXON:1 | . | . | PASS | -792 | no | . | 1229,28 | 1256,51 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:84104:84104:39:1:0 | DUPLICATION | DUP | chr1 | 152303910 | chr1 | 152308770 | FLG | EXON:3 | . | FLG-AS1 | GENE | . | . | PASS | 4860 | no | . | 1165,84 | 1258,49 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:84106:84106:27:0:0 | DELETION | DEL | chr1 | 152354960 | chr1 | 152355191 | FLG2 | EXON:3 | . | FLG-AS1 | EXON:3 | . | . | PASS | -231 | no | . | 614,0 | 816,412 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:84698:84698:27:1:0 | DELETION | DEL | chr1 | 156866439 | chr1 | 156866547 | NTRK1 | INTRON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -108 | no | . | 756,0 | 2752,22 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:86754:86754:0:0:0 | DELETION | DEL | chr1 | 207112892 | chr1 | 207113090 | C4BPA | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -198 | no | . | 219,0 | 448,8 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:87433:87433:26:6:0 | DELETION | DEL | chr1 | 226736906 | chr1 | 226737173 | ITPKB | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -267 | no | . | 1600,0 | 3095,16 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:2560:0:0:0:0:0 | DELETION | DEL | chr1 | 231163138 | chr1 | 231163205 | TRIM67 | EXON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | -67 | no | . | 178,0 | 723,11 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:72891:72891:16:1:1 | DELETION | DEL | chr2 | 47905744 | chr2 | 47905860 | FBXO11 | EXON:1 | . | ENSG00000233230 | INTERGENIC | . | . | PASS | -116 | no | . | 866,0 | 2817,13 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:75976:75982:0:0:0 | DELETION | DEL | chr2 | 178432322 | chr2 | 178447274 | PRKRA | INTRON:7 | . | CHROMR&PRKRA | GENE | . | . | PASS | -14952 | yes | . | 248,26 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:76682:76682:10:0:0 | DELETION | DEL | chr2 | 197419862 | chr2 | 197420011 | SF3B1 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | PASS | -149 | no | . | 950,0 | 2503,25 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:77902:77902:0:0:0 | DELETION | DEL | chr2 | 237542705 | chr2 | 237542842 | MLPH | INTRON:12 | . | INTERGENIC | INTERGENIC | . | . | PASS | -137 | no | . | 127,0 | 152,65 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:78161:78161:4:3:0 | DUPLICATION | DUP | chr2 | 240869043 | chr2 | 240869117 | AGXT | GENE | . | INTERGENIC | INTERGENIC | . | . | PASS | 74 | no | . | 490,4 | 656,35 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:78161:78161:0:0:0 | INSERTION | INS | chr2 | 240869074 | chr2 | 240869074 | AGXT | INTRON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | 74 | no | . | 2,0 | 190,231 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:68496:68496:1:0:0 | DELETION | DEL | chr3 | 69964323 | chr3 | 69964736 | MITF | INTRON:9 | . | INTERGENIC | INTERGENIC | . | . | PASS | -413 | no | . | 166,114 | 217,272 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:69996:69996:7:2:0 | DELETION | DEL | chr3 | 138945505 | chr3 | 138946280 | FOXL2 | EXON:1 | . | LINC01391 | INTERGENIC | . | . | PASS | -775 | no | . | 1984,11 | 2707,26 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:62524:62524:0:2:0 | DELETION | DEL | chr4 | 1394589 | chr4 | 1394746 | UVSSA | GENE | . | INTERGENIC | INTERGENIC | . | . | PASS | -157 | no | . | 236,0 | 1644,82 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:62524:62524:1:2:0 | DELETION | DEL | chr4 | 1395155 | chr4 | 1395249 | UVSSA | GENE | . | INTERGENIC | INTERGENIC | . | . | PASS | -94 | no | . | 262,0 | 1187,541 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:64219:64220:0:0:0:1 | TRANSLOCATION | BND | chr4 | 73853687 | chr4 | 73981677 | ENSG00000288796&PF4V1 | INTRON:1 | + | PF4&PF4V1 | INTRON:1 | - | . | PASS | 0 | yes | . | 418,46 | . | MantaBND:0:64219:64220:0:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:64219:64220:1:0:0:1 | TRANSLOCATION | BND | chr4 | 73854131 | chr4 | 73981119 | ENSG00000288796&PF4V1 | EXON:3 | + | PF4&PF4V1 | EXON:3 | - | . | PASS | 0 | yes | . | 511,74 | . | MantaBND:0:64219:64220:1:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:64219:64220:1:0:0:0 | TRANSLOCATION | BND | chr4 | 73981119 | chr4 | 73854131 | PF4&PF4V1 | EXON:3 | + | ENSG00000288796&PF4V1 | EXON:5 | - | . | PASS | 0 | yes | . | 511,74 | . | MantaBND:0:64219:64220:1:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:64219:64220:0:0:0:0 | TRANSLOCATION | BND | chr4 | 73981677 | chr4 | 73853687 | PF4&PF4V1 | INTRON:1 | + | ENSG00000288796&PF4V1 | INTRON:3 | - | . | PASS | 0 | yes | . | 418,46 | . | MantaBND:0:64219:64220:0:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:65347:65347:0:0:0 | INSERTION | INS | chr4 | 151280054 | chr4 | 151280054 | ENSG00000250350 | INTERGENIC | . | PRSS48 | INTRON:2 | . | . | PASS | 56 | no | . | 2,0 | 60,75 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:58629:58629:0:0:0 | DELETION | DEL | chr5 | 492176 | chr5 | 492236 | SLC9A3 | INTRON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | -60 | no | . | 0,0 | 0,181 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:60308:60308:2:1:0 | DUPLICATION | DUP | chr5 | 96896864 | chr5 | 96896964 | ENSG00000247121 | EXON:1 | . | ERAP2 | GENE | . | . | PASS | 100 | no | . | 146,3 | 310,81 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:60993:60994:2:0:0 | DUPLICATION | DUP | chr5 | 141178930 | chr5 | 141214892 | PCDHB13&PCDHB8 | GENE | . | ENSG00000279472&PCDHB13 | GENE | . | . | PASS | 35962 | yes | . | 1463,48 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:60996:60997:1:0:0 | DELETION | DEL | chr5 | 141189526 | chr5 | 141194868 | ENSG00000279375 | EXON:2 | . | PCDHB10&PCDHB9 | GENE | . | . | PASS | -5342 | yes | . | 791,23 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:61516:61516:2:1:0 | DELETION | DEL | chr5 | 150374323 | chr5 | 150375103 | TCOF1 | EXON:9 | . | INTERGENIC | INTERGENIC | . | . | PASS | -780 | no | . | 518,13 | 1091,16 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:52977:52977:1:1:0 | DELETION | DEL | chr6 | 1610950 | chr6 | 1611567 | FOXC1 | EXON:1 | . | FOXCUT | INTERGENIC | . | . | PASS | -617 | no | . | 1894,40 | 1902,7 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:54702:54702:2:0:0 | DELETION | DEL | chr6 | 32067740 | chr6 | 32068469 | TNXB | EXON:19 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -729 | no | . | 912,22 | 1547,7 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:54812:54836:1:0:0:1 | TRANSLOCATION | BND | chr6 | 32584268 | chr6 | 33080505 | HLA-DPB1&HLA-DRB1 | EXON:2 | + | HLA-DPA1&HLA-DRB1 | EXON:2 | - | . | PASS | 0 | yes | . | 1500,28 | . | MantaBND:0:54812:54836:1:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:54812:54836:1:0:0:0 | TRANSLOCATION | BND | chr6 | 33080505 | chr6 | 32584268 | HLA-DPB1&HLA-DRB1 | INTRON:1 | + | HLA-DPA1&HLA-DRB1 | INTRON:1 | - | . | PASS | 0 | yes | . | 1500,28 | . | MantaBND:0:54812:54836:1:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:55793:55793:19:1:0 | DELETION | DEL | chr6 | 41941809 | chr6 | 41941884 | CCND3 | INTERGENIC | . | INTERGENIC | INTERGENIC | . | . | PASS | -75 | no | . | 478,0 | 904,25 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:58036:58036:12:0:0 | DELETION | DEL | chr6 | 152125430 | chr6 | 152125975 | SYNE1 | INTRON:145 | . | ESR1 | GENE | . | . | PASS | -545 | no | . | 1684,47 | 2444,37 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:51239:51239:9:7:0 | DELETION | DEL | chr7 | 101033354 | chr7 | 101034062 | MUC17 | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -708 | no | . | 1507,28 | 1814,22 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:51752:51752:0:3:0 | DELETION | DEL | chr7 | 134933722 | chr7 | 134933851 | CALD1 | EXON:5 | . | ENSG00000286458 | EXON:1 | . | . | PASS | -129 | no | . | 522,0 | 1469,96 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:88988:88989:4:0:0 | DELETION | DEL | chr7 | 142752935 | chr7 | 142774212 | PRSS3P1 | EXON:1 | . | PRSS2 | EXON:1 | . | . | PASS | -21277 | yes | . | 688,26 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:88988:88989:5:0:0 | DUPLICATION | DUP | chr7 | 142753057 | chr7 | 142774750 | PRSS1&PRSS2&PRSS3P1 | GENE | . | PRSS2 | EXON:2 | . | . | PASS | 21693 | yes | . | 375,26 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:92454:92454:0:0:0 | INSERTION | INS | chr8 | 1858154 | chr8 | 1858154 | KBTBD11-OT1 | EXON:4 | . | ARHGEF10 | INTRON:3 | . | . | PASS | 71 | no | . | 0,0 | 109,120 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:92662:92662:6:3:0 | DELETION | DEL | chr8 | 10607480 | chr8 | 10608116 | RP1L1 | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -636 | no | . | 1003,42 | 1339,9 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:92729:92729:6:8:0 | DELETION | DEL | chr8 | 11758538 | chr8 | 11758841 | GATA4 | EXON:7 | . | INTERGENIC | INTERGENIC | . | . | PASS | -303 | no | . | 1541,12 | 2815,49 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:3074:3079:1:0:0:0 | TRANSLOCATION | BND | chr8 | 100706557 | chr13 | 25097699 | ENSG00000289006&PABPC1 | INTRON:11 | + | PABPC1&PABPC3 | INTRON:11 | - | . | MinSomaticScore | 0 | yes | . | 913,10 | . | MantaBND:0:3074:3079:1:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:3074:3079:0:0:0:0 | TRANSLOCATION | BND | chr8 | 100707099 | chr13 | 25097519 | ENSG00000289006&PABPC1 | INTRON:9 | + | PABPC1&PABPC3 | INTRON:9 | - | . | MinSomaticScore | 0 | yes | . | 893,28 | . | MantaBND:0:3074:3079:0:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:2633:0:0:0:5:0 | INSERTION | INS | chr9 | 91296199 | chr9 | 91296205 | AUH | INTRON | . | INTERGENIC | INTERGENIC | . | . | PASS | 0 | no | . | 1,0 | 63,69 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:91279:91279:18:1:0 | DELETION | DEL | chr9 | 127790255 | chr9 | 127790572 | CDK9 | EXON:7 | . | MIR3960 | INTERGENIC | . | . | PASS | -317 | no | . | 1694,28 | 2471,34 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:2704:0:0:0:0:0 | DELETION | DEL | chr9 | 134798569 | chr9 | 134798653 | COL5A1 | INTRON:37 | . | INTERGENIC | INTERGENIC | . | . | PASS | -84 | no | . | 36,0 | 91,60 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:92106:92106:4:2:0 | DELETION | DEL | chr9 | 136431256 | chr9 | 136431755 | INPP5E | INTRON:7 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -499 | no | . | 85,28 | 106,20 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:92147:92147:7:1:0 | DELETION | DEL | chr9 | 136545394 | chr9 | 136546090 | NOTCH1 | EXON:1 | . | NALT1 | INTERGENIC | . | . | MinSomaticScore | -696 | no | . | 623,12 | 1072,17 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:17211:17211:1:2:0 | DELETION | DEL | chr10 | 102503838 | chr10 | 102504712 | SUFU | EXON:1 | . | ACTR1A | INTERGENIC | . | . | MinSomaticScore | -874 | no | . | 465,6 | 623,9 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:598:0:0:0:0:0 | DELETION | DEL | chr10 | 132140569 | chr10 | 132140647 | JAKMIP3 | INTRON:10 | . | INTERGENIC | INTERGENIC | . | . | PASS | -78 | no | . | 34,0 | 146,140 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:9631:9631:3:1:0 | DELETION | DEL | chr11 | 1088600 | chr11 | 1088891 | MUC2 | INTRON:23 | . | INTERGENIC | INTERGENIC | . | . | PASS | -291 | no | . | 0,2 | 0,230 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:9636:9636:21:4:0 | DELETION | DEL | chr11 | 1098881 | chr11 | 1098951 | MUC2 | INTERGENIC | . | INTERGENIC | INTERGENIC | . | . | MaxMQ0Frac;MinSomaticScore | -70 | no | . | 213,0 | 2510,77 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9693:9697:1:0:0:1 | TRANSLOCATION | BND | chr11 | 1621713 | chr11 | 71565733 | KRTAP5-10&KRTAP5-4 | EXON:1 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | yes | . | 1720,35 | . | MantaBND:0:9693:9697:1:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9693:9697:0:0:0:0 | TRANSLOCATION | BND | chr11 | 1622304 | chr11 | 71565541 | ENSG00000286948 | GENE | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | yes | . | 783,24 | . | MantaBND:0:9693:9697:0:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9696:9697:0:0:0:1 | TRANSLOCATION | BND | chr11 | 1622338 | chr11 | 71538072 | KRTAP5-8 | GENE | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 741,9 | . | MantaBND:0:9696:9697:0:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:9925:9926:2:0:0 | DELETION | DEL | chr11 | 4947012 | chr11 | 4955739 | OR51A2 | EXON:1 | . | OR51A4 | EXON:1 | . | . | PASS | -8727 | yes | . | 545,46 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:9695:9696:1:0:0 | DELETION | DEL | chr11 | 71527588 | chr11 | 71538365 | KRTAP5-7&KRTAP5-8 | GENE | . | KRTAP5-7 | EXON:1 | . | . | PASS | -10777 | yes | . | 1795,18 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:9695:9696:2:2:0 | DUPLICATION | DUP | chr11 | 71527593 | chr11 | 71538558 | KRTAP5-7&KRTAP5-8 | GENE | . | KRTAP5-8 | EXON:1 | . | . | PASS | 10965 | no | . | 1291,0 | 1495,203 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:9695:9696:0:4:0 | DUPLICATION | DUP | chr11 | 71527593 | chr11 | 71538588 | KRTAP5-7&KRTAP5-8 | GENE | . | KRTAP5-8 | EXON:1 | . | . | PASS | 10995 | no | . | 1446,0 | 1497,135 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9696:9697:0:0:0:0 | TRANSLOCATION | BND | chr11 | 71538072 | chr11 | 1622338 | KRTAP5-8 | EXON:1 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 741,9 | . | MantaBND:0:9696:9697:0:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:9696:9696:0:0:2 | INSERTION | INS | chr11 | 71538486 | chr11 | 71538486 | KRTAP5-8 | EXON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | 57 | no | . | 1,0 | 127,355 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9693:9697:0:0:0:1 | TRANSLOCATION | BND | chr11 | 71565541 | chr11 | 1622304 | ENSG00000286948 | INTRON:1 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | yes | . | 783,24 | . | MantaBND:0:9693:9697:0:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:9693:9697:1:0:0:0 | TRANSLOCATION | BND | chr11 | 71565733 | chr11 | 1621713 | KRTAP5-10&KRTAP5-4 | EXON:1 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | yes | . | 1720,35 | . | MantaBND:0:9693:9697:1:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:13352:13352:7:1:0 | DELETION | DEL | chr11 | 101129006 | chr11 | 101129221 | PGR&PGR-AS1 | GENE | . | PGR | EXON:1 | . | . | MinSomaticScore | -215 | no | . | 1438,0 | 2958,17 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:13874:13874:3:0:0 | DELETION | DEL | chr11 | 118488676 | chr11 | 118488792 | KMT2A | EXON:11 | . | INTERGENIC | INTERGENIC | . | . | PASS | -116 | no | . | 538,0 | 1746,16 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:14455:14455:8:0:0 | DELETION | DEL | chr11 | 128812821 | chr11 | 128813515 | FLI1 | EXON:9 | . | FLI1-KCNJ1 | INTERGENIC | . | . | PASS | -694 | no | . | 551,335 | 987,532 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:6210:6210:46:1:0 | DELETION | DEL | chr12 | 49039494 | chr12 | 49040291 | KMT2D | EXON:33 | . | INTERGENIC | INTERGENIC | . | . | PASS | -797 | no | . | 2002,15 | 3229,42 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:6951:6951:7:0:0 | DELETION | DEL | chr12 | 55971108 | chr12 | 55971330 | CDK2 | EXON:7 | . | RAB5B | INTERGENIC | . | . | PASS | -222 | no | . | 886,0 | 1742,15 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:251:0:0:0:0:0 | DELETION | DEL | chr12 | 101920282 | chr12 | 101920384 | ENSG00000257202 | INTERGENIC | . | DRAM1 | INTRON:6 | . | . | PASS | -102 | no | . | 31,0 | 55,80 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:9250:9250:0:2:0 | INSERTION | INS | chr12 | 131918730 | chr12 | 131918730 | ULK1 | INTRON:23 | . | INTERGENIC | INTERGENIC | . | . | PASS | 319 | no | . | 11,0 | 154,189 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:3074:3079:0:0:0:1 | TRANSLOCATION | BND | chr13 | 25097519 | chr8 | 100707099 | PABPC1&PABPC3 | EXON:1 | + | ENSG00000289006&PABPC1 | EXON:1 | - | . | MinSomaticScore | 0 | yes | . | 893,28 | . | MantaBND:0:3074:3079:0:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:3074:3079:1:0:0:1 | TRANSLOCATION | BND | chr13 | 25097699 | chr8 | 100706557 | PABPC1&PABPC3 | EXON:1 | + | ENSG00000289006&PABPC1 | EXON:1 | - | . | MinSomaticScore | 0 | yes | . | 913,10 | . | MantaBND:0:3074:3079:1:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:4432:4432:11:8:0 | DUPLICATION | DUP | chr13 | 113403860 | chr13 | 113404103 | ADPRHL1 | EXON:8 | . | INTERGENIC | INTERGENIC | . | . | PASS | 243 | no | . | 1075,16 | 1533,331 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:34639:34639:2:0:0 | DELETION | DEL | chr14 | 104769485 | chr14 | 104769785 | ENSG00000258430 | EXON:2 | . | AKT1 | EXON:15 | . | . | PASS | -300 | no | . | 1789,14 | 2820,19 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:28984:28984:21:2:0 | DELETION | DEL | chr15 | 32730887 | chr15 | 32731552 | GREM1 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -665 | no | . | 1988,39 | 3047,2 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:30443:30443:0:0:0 | DELETION | DEL | chr15 | 60501111 | chr15 | 60501171 | RORA | INTRON:9 | . | RORA-AS1 | EXON:2 | . | . | PASS | -60 | no | . | 15,0 | 83,77 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:31204:31204:10:2:0 | DELETION | DEL | chr15 | 82345066 | chr15 | 82345152 | GOLGA6L10 | EXON:6 | . | INTERGENIC | INTERGENIC | . | . | PASS | -86 | no | . | 224,0 | 900,83 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:31678:31678:4:1:0 | DELETION | DEL | chr15 | 89629188 | chr15 | 89629336 | TICRR | INTERGENIC | . | KIF7 | INTRON:17 | . | . | PASS | -148 | no | . | 133,0 | 282,95 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:24352:24352:7:0:0 | INSERTION | INS | chr16 | 285937 | chr16 | 285937 | ARHGDIG | INTERGENIC | . | AXIN1 | INTERGENIC | . | . | PASS | 127 | no | . | 0,0 | 0,212 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:24441:24441:1:0:0 | INSERTION | INS | chr16 | 795450 | chr16 | 795453 | GNG13 | INTERGENIC | . | CHTF18 | INTRON:18 | . | . | PASS | 90 | no | . | 3,0 | 80,131 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:24510:24510:1:0:0 | DELETION | DEL | chr16 | 1450687 | chr16 | 1450925 | ENSG00000260051 | INTERGENIC | . | ENSG00000261641 | INTERGENIC | . | . | PASS | -238 | no | . | 141,0 | 206,266 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:24641:24641:10:1:0 | DELETION | DEL | chr16 | 2053462 | chr16 | 2054249 | TSC2 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -787 | no | . | 1737,14 | 2137,7 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:24709:24709:4:0:0 | DELETION | DEL | chr16 | 2297941 | chr16 | 2298181 | ABCA3 | INTRON:15 | . | INTERGENIC | INTERGENIC | . | . | PASS | -240 | no | . | 170,0 | 98,86 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:26294:26294:1:0:0 | DELETION | DEL | chr16 | 30782852 | chr16 | 30783440 | ZNF629 | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -588 | no | . | 718,20 | 1001,32 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:27841:27841:10:0:0 | DELETION | DEL | chr16 | 73058689 | chr16 | 73058797 | ENSG00000271009 | INTERGENIC | . | ZFHX3 | GENE | . | . | PASS | -108 | no | . | 603,0 | 1811,15 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:28449:28449:0:0:0 | DELETION | DEL | chr16 | 89196353 | chr16 | 89196458 | CDH15 | INTERGENIC | . | SLC22A31 | INTRON:8 | . | . | PASS | -105 | no | . | 24,0 | 103,80 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:603:0:0:0:0:0 | INSERTION | INS | chr17 | 864137 | chr17 | 864137 | NXN | INTRON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | 121 | no | . | 2,0 | 142,172 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:18322:18322:10:7:0 | DELETION | DEL | chr17 | 1351852 | chr17 | 1352590 | ENSG00000280408 | EXON:1 | . | YWHAE | INTRON:5 | . | . | PASS | -738 | no | . | 1713,13 | 1657,10 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:21009:21009:13:2:1 | DELETION | DEL | chr17 | 40342198 | chr17 | 40342339 | RARA | INTRON:1 | . | RARA-AS1 | EXON:2 | . | . | MinSomaticScore | -141 | no | . | 1068,0 | 2785,14 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:21107:21107:8:3:0 | DUPLICATION | DUP | chr17 | 40818851 | chr17 | 40818905 | KRT10 | EXON:7 | . | INTERGENIC | INTERGENIC | . | . | PASS | 54 | no | . | 781,59 | 1129,193 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:21107:21107:0:7:0 | INSERTION | INS | chr17 | 40818865 | chr17 | 40818865 | KRT10 | EXON:7 | . | INTERGENIC | INTERGENIC | . | . | PASS | 120 | no | . | 1,0 | 381,990 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:21175:21176:1:0:0 | DELETION | DEL | chr17 | 41238437 | chr17 | 41250411 | KRTAP9-4&KRTAP9-8 | GENE | . | KRTAP9-4 | EXON:1 | . | . | MinSomaticScore | -11974 | yes | . | 694,19 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:42217:42217:2:1:0 | DELETION | DEL | chr18 | 58322542 | chr18 | 58323119 | NEDD4L | INTRON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -577 | no | . | 292,10 | 270,8 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:42396:42396:14:1:0 | DELETION | DEL | chr18 | 63319434 | chr18 | 63320034 | BCL2 | EXON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | -600 | no | . | 1578,61 | 2477,18 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:34909:34909:1:0:0 | DELETION | DEL | chr19 | 620925 | chr19 | 620987 | HCN2 | INTERGENIC | . | POLRMT | INTRON:10 | . | . | PASS | -62 | no | . | 34,0 | 142,80 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:35605:35605:9:3:0 | DELETION | DEL | chr19 | 4511338 | chr19 | 4511734 | PLIN4 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | PASS | -396 | no | . | 570,154 | 670,300 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:35672:35672:0:3:0 | DELETION | DEL | chr19 | 5131563 | chr19 | 5131645 | KDM4B | INTRON:12 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -82 | no | . | 276,0 | 507,13 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:36909:36910:1:0:0:0 | TRANSLOCATION | BND | chr19 | 14397387 | chr19 | 14765922 | ADGRE2&ADGRE5 | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 556,9 | . | MantaBND:0:36909:36910:1:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:36909:36910:0:0:0:0 | TRANSLOCATION | BND | chr19 | 14398048 | chr19 | 14765330 | ADGRE2&ADGRE5 | INTRON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 618,66 | . | MantaBND:0:36909:36910:0:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:36909:36910:0:0:0:1 | TRANSLOCATION | BND | chr19 | 14765330 | chr19 | 14398048 | ADGRE2&ADGRE5 | EXON:9 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 618,66 | . | MantaBND:0:36909:36910:0:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:36909:36910:1:0:0:1 | TRANSLOCATION | BND | chr19 | 14765922 | chr19 | 14397387 | ADGRE2&ADGRE5 | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 556,9 | . | MantaBND:0:36909:36910:1:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:37833:37834:0:0:0 | DELETION | DEL | chr19 | 21973207 | chr19 | 22181092 | BNIP3P28&BNIP3P29&ENSG00000268116&ENSG00000269504&MTDHP5&PCGF7P&VN1R85P&ZNF208&ZNF257&ZNF676&ZNF92P2 | GENE | . | ZNF257 | EXON:3 | . | . | PASS | -207885 | yes | . | 124,14 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:38801:38801:0:0:0 | DELETION | DEL | chr19 | 40880763 | chr19 | 40880824 | CYP2A7 | INTRON:2 | . | ENSG00000268797 | EXON:1 | . | . | PASS | -61 | no | . | 23,0 | 79,124 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:40228:40228:3:0:0 | INSERTION | INS | chr19 | 51704885 | chr19 | 51704885 | SPACA6 | INTRON:8 | . | INTERGENIC | INTERGENIC | . | . | PASS | 153 | no | . | 0,0 | 1,55 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:40446:40447:3:0:0:1 | TRANSLOCATION | BND | chr19 | 54218292 | chr19 | 54666815 | LILRB3&LILRB4 | INTRON:12 | + | LILRB4&RPS9 | GENE | - | . | PASS | 0 | yes | . | 313,12 | . | MantaBND:0:40446:40447:3:0:0:0 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDUP:TANDEM:0:40458:40469:1:0:0 | DUPLICATION | DUP | chr19 | 54573812 | chr19 | 54631082 | LILRA2&LILRB1 | GENE | . | LILRB1 | EXON:1 | . | . | MinSomaticScore | 57270 | yes | . | 894,23 | . | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaBND:0:40446:40447:3:0:0:0 | TRANSLOCATION | BND | chr19 | 54666815 | chr19 | 54218292 | LILRB3&LILRB4 | INTRON:10 | + | LILRB4&RPS9 | INTRON:10 | - | . | PASS | 0 | yes | . | 313,12 | . | MantaBND:0:40446:40447:3:0:0:1 |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaINS:0:40660:40660:1:0:0 | INSERTION | INS | chr19 | 55308312 | chr19 | 55308312 | TMEM150B | INTERGENIC | . | ENSG00000268729 | INTERGENIC | . | . | MinSomaticScore | 51 | no | . | 0,0 | 14,29 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:40831:40831:9:2:0 | DELETION | DEL | chr19 | 57253681 | chr19 | 57254437 | ZNF805 | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | PASS | -756 | no | . | 797,15 | 1016,3 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:40949:40949:0:0:0 | DELETION | DEL | chr19 | 58433564 | chr19 | 58434320 | ZNF132 | EXON:3 | . | ENSG00000268912 | INTERGENIC | . | . | PASS | -756 | no | . | 644,17 | 904,6 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:45773:45773:2:0:0 | DELETION | DEL | chr20 | 32358658 | chr20 | 32358758 | ASXL1 | EXON:1 | . | ENSG00000277692 | INTERGENIC | . | . | MinSomaticScore | -100 | no | . | 905,0 | 2619,16 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:45776:45776:1:0:0 | DELETION | DEL | chr20 | 32372752 | chr20 | 32373182 | ASXL1 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -430 | no | . | 256,11 | 253,14 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:47015:47015:4:3:0 | DELETION | DEL | chr20 | 58891240 | chr20 | 58891711 | ENSG00000225806 | INTERGENIC | . | GNAS | INTRON:1 | . | . | PASS | -471 | no | . | 1229,13 | 1315,18 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:47015:47015:23:2:1 | DELETION | DEL | chr20 | 58891303 | chr20 | 58891707 | ENSG00000225806 | INTERGENIC | . | GNAS | INTRON:1 | . | . | MinSomaticScore | -404 | no | . | 1318,12 | 1539,12 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:43008:43008:35:4:0 | DELETION | DEL | chr22 | 22890289 | chr22 | 22890573 | IGLJ1 | INTERGENIC | . | IGLC1 | INTERGENIC | . | . | MinSomaticScore | -284 | no | . | 957,0 | 710,57 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:43008:43008:37:1:0 | DELETION | DEL | chr22 | 22890289 | chr22 | 22890575 | IGLJ1 | INTERGENIC | . | IGLC1 | INTERGENIC | . | . | MinSomaticScore | -286 | no | . | 955,0 | 701,84 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:42995:42995:25:0:0 | DELETION | DEL | chr22 | 22894175 | chr22 | 22894662 | IGLC1 | INTERGENIC | . | IGLJ2 | INTERGENIC | . | . | MinSomaticScore | -487 | no | . | 1964,70 | 2328,58 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:43590:43590:8:6:0 | DELETION | DEL | chr22 | 29489596 | chr22 | 29489704 | NEFH | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | PASS | -108 | no | . | 492,0 | 1770,479 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:44239:44239:23:7:0 | DELETION | DEL | chr22 | 37724352 | chr22 | 37724931 | TRIOBP | EXON:7 | . | ENSG00000100101 | EXON:13 | . | . | MinSomaticScore | -579 | no | . | 998,36 | 1848,62 | |
| 869_VZQ-T1-TDNA-1_A23WGJTLT4_1 | MantaDEL:0:162:162:2:6:1 | DELETION | DEL | chrX | 1365382 | chrX | 1366224 | IL3RA | INTRON:9 | . | INTERGENIC | INTERGENIC | . | . | MaxMQ0Frac | -842 | no | . | 514,11 | 460,30 |
126 rows