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- 1136_7L-T1-TDNA-1_A23WGJTLT4_2_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.sv.hmnz.tsv
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- s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_dna/hmnz_cgp_dna_exp0034__70824045--20260606-020246/1136_7L-T1-TDNA-1_A23WGJTLT4_2_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1/variants/dna_fusions/1136_7L-T1-TDNA-1_A23WGJTLT4_2_vs_1136_7L-N1-BDNA-1_A237CFYLT3_1.sv.hmnz.tsv
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- hmnz-cgp-dna-exp0034-20260606-020246
- Published
- Jun 05, 2026 7:05 PM
Content
View in new tab| sample | sv_id | sv_type | svtype_standard | chr1 | pos1 | chr2 | pos2 | gene1 | region1 | strand1 | gene2 | region2 | strand2 | qual | filter | svlen | imprecise | tumor_gt | tumor_pr | tumor_sr | mate_id |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:70852:70852:4:1:0 | DELETION | DEL | chr1 | 2563225 | chr1 | 2563404 | TNFRSF14 | EXON:8 | . | ENSG00000225931 | INTERGENIC | . | . | PASS | -179 | no | . | 608,0 | 1497,35 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:71154:71154:30:0:0 | DELETION | DEL | chr1 | 8013885 | chr1 | 8014454 | ERRFI1 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -569 | no | . | 851,50 | 1218,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:73080:73080:2:2:0 | DELETION | DEL | chr1 | 39413330 | chr1 | 39413975 | MACF1 | INTRON:58 | . | INTERGENIC | INTERGENIC | . | . | PASS | -645 | no | . | 629,41 | 815,66 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:74711:74711:9:0:0 | DELETION | DEL | chr1 | 109928667 | chr1 | 109929267 | CSF1 | EXON:9 | . | INTERGENIC | INTERGENIC | . | . | PASS | -600 | no | . | 537,48 | 927,2 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:75589:75589:26:1:0 | DELETION | DEL | chr1 | 152111664 | chr1 | 152112204 | TCHH | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -540 | no | . | 697,36 | 1096,27 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:75603:75603:17:0:0 | DELETION | DEL | chr1 | 152355164 | chr1 | 152355851 | FLG2 | EXON:3 | . | FLG-AS1 | EXON:3 | . | . | PASS | -687 | no | . | 739,33 | 965,7 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:76697:76697:4:0:0:0 | TRANSLOCATION | BND | chr1 | 161123604 | chr1 | 161123856 | DEDD&NIT1 | GENE | + | NIT1 | GENE | - | . | MinSomaticScore | 0 | no | . | 105,2 | 202,4 | MantaBND:0:76697:76697:4:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:76697:76697:4:0:0:1 | TRANSLOCATION | BND | chr1 | 161123850 | chr1 | 161123610 | DEDD&NIT1 | GENE | + | NIT1 | GENE | - | . | MinSomaticScore | 0 | no | . | 105,2 | 202,4 | MantaBND:0:76697:76697:4:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:77063:77063:0:3:0 | DELETION | DEL | chr1 | 169540779 | chr1 | 169541508 | F5 | EXON:13 | . | INTERGENIC | INTERGENIC | . | . | PASS | -729 | no | . | 542,29 | 840,21 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:77465:77465:3:0:2 | DELETION | DEL | chr1 | 186307422 | chr1 | 186307917 | PRG4 | EXON:7 | . | TPR | INTERGENIC | . | . | PASS | -495 | no | . | 993,63 | 1472,75 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:77944:77944:14:4:0 | DELETION | DEL | chr1 | 204555206 | chr1 | 204555802 | MDM4 | EXON:11 | . | INTERGENIC | INTERGENIC | . | . | PASS | -596 | no | . | 568,28 | 421,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:77838:77838:8:1:0 | DELETION | DEL | chr1 | 205660857 | chr1 | 205661411 | SLC45A3 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -554 | no | . | 881,55 | 1336,1 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:19042:19042:10:2:0 | DELETION | DEL | chr1 | 226735406 | chr1 | 226736203 | ITPKB | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -797 | no | . | 669,10 | 1036,7 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:19042:19042:23:3:0 | DELETION | DEL | chr1 | 226737238 | chr1 | 226737745 | ITPKB | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -507 | no | . | 913,53 | 1322,14 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:66231:66231:0:7:0 | DELETION | DEL | chr2 | 60460826 | chr2 | 60461462 | BCL11A | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | PASS | -636 | no | . | 858,35 | 1213,2 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:68992:68992:2:0:0:0 | TRANSLOCATION | BND | chr2 | 190659258 | chr2 | 190660382 | NAB1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 241,2 | 344,4 | MantaBND:0:68992:68992:2:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:68992:68992:2:0:0:1 | TRANSLOCATION | BND | chr2 | 190660379 | chr2 | 190659261 | NAB1 | INTRON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 241,2 | 344,4 | MantaBND:0:68992:68992:2:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:69210:69210:4:0:0 | DELETION | DEL | chr2 | 197419862 | chr2 | 197420011 | SF3B1 | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -149 | no | . | 365,0 | 1110,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:69572:69572:23:3:0:1 | TRANSLOCATION | BND | chr2 | 214727121 | chr2 | 214728381 | BARD1 | EXON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 999,3 | 1447,6 | MantaBND:0:69572:69572:23:3:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:69572:69572:23:3:0:0 | TRANSLOCATION | BND | chr2 | 214728376 | chr2 | 214727126 | BARD1 | EXON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 999,3 | 1447,6 | MantaBND:0:69572:69572:23:3:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:60865:60880:1:1:0 | DUPLICATION | DUP | chr3 | 41221864 | chr3 | 41222100 | CTNNB1 | GENE | . | INTERGENIC | INTERGENIC | . | . | PASS | 236 | no | . | 688,3 | 1124,6 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:49228:49228:10:0:0 | DELETION | DEL | chr3 | 44721680 | chr3 | 44722268 | ZNF502 | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -588 | no | . | 525,47 | 716,7 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:64842:64842:10:4:0 | DUPLICATION | DUP | chr3 | 196081304 | chr3 | 196081510 | TFRC | EXON:1 | . | INTERGENIC | INTERGENIC | . | . | PASS | 206 | no | . | 607,3 | 1156,6 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:57559:57559:34:1:0 | DELETION | DEL | chr4 | 20253143 | chr4 | 20253558 | SLIT2 | INTERGENIC | . | INTERGENIC | INTERGENIC | . | . | PASS | -415 | no | . | 800,66 | 1390,42 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:58121:58121:28:1:0 | DUPLICATION | DUP | chr4 | 65320633 | chr4 | 65320931 | EPHA5 | EXON:18 | . | INTERGENIC | INTERGENIC | . | . | PASS | 298 | no | . | 646,3 | 1125,6 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:59809:59809:4:0:0 | DELETION | DEL | chr4 | 186726507 | chr4 | 186726673 | FAT1 | INTERGENIC | . | INTERGENIC | INTERGENIC | . | . | PASS | -166 | no | . | 535,0 | 1288,11 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:7727:0:1:0:3:0 | DELETION | DEL | chr5 | 1037614 | chr5 | 1038271 | NKD2 | INTRON:10 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -657 | no | . | 608,16 | 950,3 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:54040:54040:8:3:0 | DELETION | DEL | chr5 | 23527080 | chr5 | 23527668 | PRDM9 | EXON:11 | . | INTERGENIC | INTERGENIC | . | . | PASS | -588 | no | . | 805,56 | 1176,146 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:55203:55203:7:0:0:1 | TRANSLOCATION | BND | chr5 | 122388364 | chr5 | 122388822 | SNCAIP | INTRON:1 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 577,2 | 731,2 | MantaBND:0:55203:55203:7:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:55203:55203:7:0:0:0 | TRANSLOCATION | BND | chr5 | 122388815 | chr5 | 122388371 | SNCAIP | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 577,2 | 731,2 | MantaBND:0:55203:55203:7:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:38488:38488:0:2:0 | DELETION | DEL | chr5 | 179032623 | chr5 | 179033295 | ZNF879 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | PASS | -672 | no | . | 443,18 | 536,3 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:56764:56764:1:0:0 | DUPLICATION | DUP | chr5 | 181195568 | chr5 | 181196102 | TRIM7 | INTRON:7 | . | TRIM7-AS1 | INTERGENIC | . | . | MinSomaticScore | 534 | no | . | 275,2 | 422,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:48368:48368:0:1:0 | DELETION | DEL | chr6 | 1610948 | chr6 | 1611909 | FOXC1 | EXON:1 | . | FOXCUT | INTERGENIC | . | . | PASS | -961 | no | . | 872,16 | 1191,11 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:16051:16051:5:0:0 | DUPLICATION | DUP | chr6 | 110101963 | chr6 | 110102379 | WASF1 | INTRON:9 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 416 | no | . | 197,2 | 405,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:46425:46425:6:0:0 | DELETION | DEL | chr7 | 81754670 | chr7 | 81755244 | HGF | INTRON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -574 | no | . | 370,19 | 621,7 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:47011:47011:0:3:0 | DELETION | DEL | chr7 | 100994048 | chr7 | 100994717 | MUC12 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | MaxMQ0Frac;MinSomaticScore | -669 | no | . | 133,15 | 1437,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:47009:47011:4:0:0 | DELETION | DEL | chr7 | 100995540 | chr7 | 101004786 | MUC12 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -9246 | yes | . | 679,13 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:47022:47022:27:2:0 | DELETION | DEL | chr7 | 101034911 | chr7 | 101035619 | MUC17 | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -708 | no | . | 821,30 | 953,28 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:48731:48731:0:3:0 | DELETION | DEL | chr7 | 157009949 | chr7 | 157010237 | MNX1 | EXON:1 | . | MNX1-AS1 | INTERGENIC | . | . | PASS | -288 | no | . | 480,1 | 383,16 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:83422:83422:5:1:0 | DELETION | DEL | chr8 | 10607610 | chr8 | 10608171 | RP1L1 | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | PASS | -561 | no | . | 727,51 | 699,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:83469:83469:2:0:0 | DELETION | DEL | chr8 | 11758538 | chr8 | 11758841 | GATA4 | EXON:7 | . | INTERGENIC | INTERGENIC | . | . | PASS | -303 | no | . | 695,26 | 1410,42 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:84268:84268:37:0:0 | DELETION | DEL | chr8 | 37698193 | chr8 | 37698424 | ZNF703 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -231 | no | . | 641,0 | 1385,17 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:84268:84268:44:0:0 | DELETION | DEL | chr8 | 37698723 | chr8 | 37699899 | ZNF703 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -1176 | no | . | 929,5 | 1449,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:84350:84350:13:0:0 | DUPLICATION | DUP | chr8 | 38317361 | chr8 | 38317748 | NSD3 | INTRON:9 | . | INTERGENIC | INTERGENIC | . | . | PASS | 387 | no | . | 783,3 | 1115,3 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:14370:0:0:1:0:0 | DUPLICATION | DUP | chr8 | 92010981 | chr8 | 92011212 | RUNX1T1 | INTRON:5 | . | INTERGENIC | INTERGENIC | . | . | PASS | 231 | no | . | 249,4 | 301,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:33223:33223:0:3:0 | DELETION | DEL | chr8 | 144722032 | chr8 | 144722617 | ZNF251 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | PASS | -585 | no | . | 424,37 | 651,2 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:79309:79309:1:0:0:0 | TRANSLOCATION | BND | chr9 | 2058315 | chr9 | 2058397 | SMARCA2 | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 476,1 | 701,8 | MantaBND:0:79309:79309:1:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:79309:79309:1:0:0:1 | TRANSLOCATION | BND | chr9 | 2058392 | chr9 | 2058320 | SMARCA2 | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 476,1 | 701,8 | MantaBND:0:79309:79309:1:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:79831:79831:7:0:0:1 | TRANSLOCATION | BND | chr9 | 21866435 | chr9 | 21866553 | MTAP | INTRON:7 | + | ENSG00000264545&MTAP | INTRON:7 | - | . | MinSomaticScore | 0 | no | . | 583,3 | 1044,4 | MantaBND:0:79831:79831:7:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:79831:79831:7:0:0:0 | TRANSLOCATION | BND | chr9 | 21866549 | chr9 | 21866439 | MTAP | INTRON:7 | + | ENSG00000264545&MTAP | INTRON:7 | - | . | MinSomaticScore | 0 | no | . | 583,3 | 1044,4 | MantaBND:0:79831:79831:7:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:81748:81748:4:0:0 | DUPLICATION | DUP | chr9 | 113042748 | chr9 | 113043084 | ZFP37 | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 336 | no | . | 229,2 | 464,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:82126:82126:32:2:0 | DELETION | DEL | chr9 | 127790255 | chr9 | 127790572 | CDK9 | EXON:7 | . | MIR3960 | INTERGENIC | . | . | PASS | -317 | no | . | 734,21 | 1124,24 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:9126:9127:1:0:0 | DUPLICATION | DUP | chr11 | 4946521 | chr11 | 4954883 | OR51A2&OR51A4 | GENE | . | MMP26&OR51A2 | GENE | . | . | PASS | 8362 | yes | . | 601,13 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:10900:10900:2:8:0 | DELETION | DEL | chr11 | 64368839 | chr11 | 64369635 | RPS6KA4 | INTRON:13 | . | MIR1237 | INTERGENIC | . | . | MinSomaticScore | -796 | no | . | 832,11 | 1071,6 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:12426:12426:14:2:0 | DUPLICATION | DUP | chr11 | 108332585 | chr11 | 108332899 | ATM | GENE | . | C11orf65 | GENE | . | . | MinSomaticScore | 314 | no | . | 329,2 | 614,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:12800:12800:2:0:0:1 | TRANSLOCATION | BND | chr11 | 119100744 | chr11 | 119100810 | DPAGT1 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 307,0 | 506,8 | MantaBND:0:12800:12800:2:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:12800:12800:2:0:0:0 | TRANSLOCATION | BND | chr11 | 119100808 | chr11 | 119100746 | DPAGT1 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 307,0 | 506,8 | MantaBND:0:12800:12800:2:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:4589:4589:3:2:0 | DELETION | DEL | chr12 | 11392927 | chr12 | 11393422 | PRB2 | EXON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -495 | no | . | 690,105 | 1616,39 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:5527:5527:3:1:0 | DELETION | DEL | chr12 | 40482214 | chr12 | 40482844 | MUC19 | EXON:56 | . | INTERGENIC | INTERGENIC | . | . | PASS | -630 | no | . | 454,24 | 821,2 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:5527:5527:24:0:0 | DELETION | DEL | chr12 | 40483814 | chr12 | 40486672 | MUC19 | EXON:56 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -2858 | yes | . | 226,8 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:29747:29747:7:0:0:1 | TRANSLOCATION | BND | chr14 | 23325227 | chr14 | 23325310 | BCL2L2-PABPN1&PABPN1 | INTRON:6 | + | PABPN1 | INTRON:6 | - | . | PASS | 0 | no | . | 112,1 | 170,8 | MantaBND:0:29747:29747:7:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:29747:29747:7:0:0:0 | TRANSLOCATION | BND | chr14 | 23325303 | chr14 | 23325234 | BCL2L2-PABPN1&PABPN1 | EXON:7 | + | PABPN1 | EXON:7 | - | . | PASS | 0 | no | . | 112,1 | 170,8 | MantaBND:0:29747:29747:7:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:31655:31655:2:1:0 | DELETION | DEL | chr14 | 104772700 | chr14 | 104773436 | AKT1 | INTRON:12 | . | ENSG00000258430 | INTERGENIC | . | . | MinSomaticScore | -736 | no | . | 636,12 | 938,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:27854:27854:2:0:0 | DUPLICATION | DUP | chr15 | 72356526 | chr15 | 72356803 | HEXA | INTRON:2 | . | ENSG00000260729 | EXON:2 | . | . | PASS | 277 | no | . | 188,4 | 197,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:25040:25040:7:1:0 | DELETION | DEL | chr15 | 84621080 | chr15 | 84621668 | ZSCAN2 | EXON:3 | . | ENSG00000276278 | INTERGENIC | . | . | PASS | -588 | no | . | 461,29 | 632,9 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:28924:28924:2:7:0 | DELETION | DEL | chr15 | 88856761 | chr15 | 88857049 | ACAN | EXON:12 | . | INTERGENIC | INTERGENIC | . | . | MaxMQ0Frac | -288 | no | . | 266,0 | 2520,100 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:22634:22634:14:1:0 | DELETION | DEL | chr16 | 2057745 | chr16 | 2058155 | TSC2 | INTRON:9 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -410 | no | . | 345,19 | 886,16 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:22645:22645:3:0:0 | DELETION | DEL | chr16 | 2079211 | chr16 | 2080340 | TSC2 | INTRON:28 | . | INTERGENIC | INTERGENIC | . | . | PASS | -1129 | no | . | 823,16 | 1199,12 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:3661:0:0:0:0:0:1 | TRANSLOCATION | BND | chr16 | 20792159 | chr16 | 20792386 | ACSM3&ERI2 | INTRON:11 | + | ACSM3 | INTRON:11 | - | . | MinSomaticScore | 0 | no | . | 218,2 | 286,2 | MantaBND:3661:0:0:0:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:3661:0:0:0:0:0:0 | TRANSLOCATION | BND | chr16 | 20792378 | chr16 | 20792167 | ACSM3&ERI2 | INTRON:12 | + | ACSM3 | INTRON:12 | - | . | MinSomaticScore | 0 | no | . | 218,2 | 286,2 | MantaBND:3661:0:0:0:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:17014:17014:1:2:0 | DELETION | DEL | chr17 | 4979910 | chr17 | 4980523 | CAMTA2 | EXON:9 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -613 | no | . | 428,15 | 576,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:17287:17287:5:1:1 | DELETION | DEL | chr17 | 7513448 | chr17 | 7514059 | POLR2A | EXON:30 | . | INTERGENIC | INTERGENIC | . | . | PASS | -611 | no | . | 693,36 | 869,6 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:19448:19449:0:0:0 | DELETION | DEL | chr17 | 41238284 | chr17 | 41250219 | KRTAP9-4&KRTAP9-8 | GENE | . | KRTAP9-4 | EXON:1 | . | . | PASS | -11935 | yes | . | 605,21 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:19722:19722:2:1:0 | DELETION | DEL | chr17 | 42338029 | chr17 | 42338570 | STAT3 | INTRON:6 | . | INTERGENIC | INTERGENIC | . | . | PASS | -541 | no | . | 149,88 | 434,0 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:21077:21077:21:0:0 | DELETION | DEL | chr17 | 60665459 | chr17 | 60666539 | PPM1D | EXON:6 | . | RNU6-623P | INTERGENIC | . | . | PASS | -1080 | no | . | 370,11 | 475,13 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:21990:21990:0:2:0 | DELETION | DEL | chr17 | 80090213 | chr17 | 80090401 | CCDC40 | INTRON:17 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -188 | no | . | 509,0 | 884,14 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:38208:38208:5:2:0 | DELETION | DEL | chr18 | 9886810 | chr18 | 9887620 | TXNDC2 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -810 | no | . | 651,23 | 739,33 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:33037:33037:16:0:1 | DELETION | DEL | chr19 | 8499208 | chr19 | 8499355 | PRAM1 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -147 | no | . | 199,0 | 650,9 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:33092:33107:2:0:0 | DUPLICATION | DUP | chr19 | 8896711 | chr19 | 8905657 | MUC16 | INTRON:34 | . | INTERGENIC | INTERGENIC | . | . | PASS | 8946 | yes | . | 208,29 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:33487:33487:3:4:0 | DELETION | DEL | chr19 | 11057841 | chr19 | 11059013 | SMARCA4 | INTRON:32 | . | INTERGENIC | INTERGENIC | . | . | PASS | -1172 | no | . | 272,6 | 473,10 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:34216:34216:24:1:0 | DELETION | DEL | chr19 | 16325163 | chr19 | 16325842 | KLF2 | INTRON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -679 | no | . | 910,21 | 1284,10 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:34216:34216:2:3:0 | DELETION | DEL | chr19 | 16325175 | chr19 | 16325847 | KLF2 | INTRON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -672 | no | . | 861,29 | 1292,12 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:35402:35402:30:1:0 | DELETION | DEL | chr19 | 41880650 | chr19 | 41880818 | CD79A | INTRON:3 | . | ARHGEF1 | INTERGENIC | . | . | PASS | -168 | no | . | 409,0 | 1166,14 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:36072:36072:1:1:0 | DELETION | DEL | chr19 | 44157024 | chr19 | 44157864 | ZNF234 | EXON:6 | . | ENSG00000287035 | INTERGENIC | . | . | MinSomaticScore | -840 | no | . | 316,11 | 354,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:37411:37413:0:0:0 | DELETION | DEL | chr19 | 54220082 | chr19 | 54239942 | ENSG00000235081&ENSG00000269524&LILRA6&LILRB3&RPS9 | GENE | . | ENSG00000269524 | EXON:1 | . | . | PASS | -19860 | yes | . | 460,19 | . | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDUP:TANDEM:0:37411:37413:2:4:0 | DUPLICATION | DUP | chr19 | 54220550 | chr19 | 54239616 | LILRA6&LILRB3 | GENE | . | LILRA6&RPS9 | GENE | . | . | PASS | 19066 | no | . | 256,17 | 227,4 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37411:37416:0:0:0:1 | TRANSLOCATION | BND | chr19 | 54220643 | chr19 | 54575665 | LILRA2&LILRB3 | EXON:6 | + | LILRA2&RPS9 | GENE | - | . | PASS | 0 | yes | . | 472,6 | . | MantaBND:0:37411:37416:0:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37411:37416:2:0:0:0 | TRANSLOCATION | BND | chr19 | 54221441 | chr19 | 54575199 | LILRA2&LILRB3 | INTRON:4 | + | LILRA2&RPS9 | GENE | - | . | PASS | 0 | yes | . | 435,8 | . | MantaBND:0:37411:37416:2:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37417:37418:0:0:0:1 | TRANSLOCATION | BND | chr19 | 54280655 | chr19 | 54630838 | LILRB1&LILRB2 | INTRON:1 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 203,10 | . | MantaBND:0:37417:37418:0:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37411:37416:2:0:0:1 | TRANSLOCATION | BND | chr19 | 54575199 | chr19 | 54221441 | LILRA2&LILRB3 | INTRON:5 | + | LILRA2&RPS9 | INTRON:5 | - | . | PASS | 0 | yes | . | 435,8 | . | MantaBND:0:37411:37416:2:0:0:0 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37411:37416:0:0:0:0 | TRANSLOCATION | BND | chr19 | 54575665 | chr19 | 54220643 | LILRA2&LILRB3 | INTRON:6 | + | LILRA2&RPS9 | INTRON:6 | - | . | PASS | 0 | yes | . | 472,6 | . | MantaBND:0:37411:37416:0:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaBND:0:37417:37418:0:0:0:0 | TRANSLOCATION | BND | chr19 | 54630838 | chr19 | 54280655 | LILRB1&LILRB2 | INTRON:1 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 203,10 | . | MantaBND:0:37417:37418:0:0:0:1 |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:37904:37904:6:1:0 | DELETION | DEL | chr19 | 58261725 | chr19 | 58262397 | ZNF544 | EXON:4 | . | ENSG00000268201 | INTERGENIC | . | . | PASS | -672 | no | . | 461,20 | 531,8 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:5639:0:0:0:1:0 | DELETION | DEL | chr20 | 25675505 | chr20 | 25676429 | ZNF337 | EXON:5 | . | ENSG00000278383 | INTERGENIC | . | . | MinSomaticScore | -924 | no | . | 456,6 | 675,1 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:43168:43168:11:0:0 | DELETION | DEL | chr20 | 62323487 | chr20 | 62324534 | LAMA5 | EXON:44 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -1047 | no | . | 477,5 | 721,5 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:39491:39491:12:1:0 | DELETION | DEL | chr22 | 20405930 | chr22 | 20406518 | ZNF74 | EXON:5 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -588 | no | . | 616,30 | 741,23 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:39734:39734:35:0:0 | DELETION | DEL | chr22 | 22894175 | chr22 | 22894662 | IGLC1 | INTERGENIC | . | IGLJ2 | INTERGENIC | . | . | MinSomaticScore | -487 | no | . | 891,48 | 1241,32 | |
| 1136_7L-T1-TDNA-1_A23WGJTLT4_2 | MantaDEL:0:40263:40263:1:1:0 | DELETION | DEL | chr22 | 28883307 | chr22 | 28884217 | ZNRF3 | EXON:1 | . | ENSG00000226471-ZNRF3 | INTERGENIC | . | . | PASS | -910 | no | . | 293,10 | 353,2 |
99 rows