File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/bbe5932647fca3d92ed1608dbd8a2e/.command.log
Size
843 bytes
Task
NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_BIOMARKERS:HARMONIZE_BIOMARKERS_ALTERA_INHOUSE_DNA:ALTERA_INHOUSE_DNA_PARSE_TMB (1136_5BE-T1-TDNA-1_A23WGJTLT4_1_vs_1136_5BE-N1-BDNA-1_A237CFYLT3_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/bbe5932647fca3d92ed1608dbd8a2e/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0034/tools__44c19e3d--20260605-212233/variant_calling/tmb/1136_5BE-T1-TDNA-1_A23WGJTLT4_1_vs_1136_5BE-N1-BDNA-1_A237CFYLT3_1/1136_5BE-T1-TDNA-1_A23WGJTLT4_1_vs_1136_5BE-N1-BDNA-1_A237CFYLT3_1.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/bbe5932647fca3d92ed1608dbd8a2e/.command.run
==> STAGING COMPLETE (3 inputs)

Parsing TMB from: 1136_5BE-T1-TDNA-1_A23WGJTLT4_1_vs_1136_5BE-N1-BDNA-1_A237CFYLT3_1.tnseq.filtered_snpEff.ann.tmb.csv
  Nonsyn TMB: 1.0835
  TMB Category: LOW
Harmonized TMB CSV written to: 1136_5BE-T1-TDNA-1_A23WGJTLT4_1_vs_1136_5BE-N1-BDNA-1_A237CFYLT3_1.tmb.hmnz.csv