sample	sv_id	sv_type	svtype_standard	chr1	pos1	chr2	pos2	gene1	region1	strand1	gene2	region2	strand2	qual	filter	svlen	imprecise	tumor_gt	tumor_pr	tumor_sr	mate_id
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30738:0:0:0:0:0:0	TRANSLOCATION	BND	chr1	20849530	chr1	20849651	EIF4G3	EXON:25	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	76,3	334,4	MantaBND:30738:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30738:0:0:0:0:0:1	TRANSLOCATION	BND	chr1	20849645	chr1	20849536	EIF4G3	INTRON:24	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	76,3	334,4	MantaBND:30738:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:0:41016:41016:9:0:0	DUPLICATION	DUP	chr1	40236298	chr1	40236644	RLF	EXON:7	.	INTERGENIC	INTERGENIC	.	.	MinSomaticScore	346	no	.	256,2	728,2	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:31612:0:0:0:0:0:1	TRANSLOCATION	BND	chr1	71776325	chr1	71776486	NEGR1	INTRON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	206,2	562,3	MantaBND:31612:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:31612:0:0:0:0:0:0	TRANSLOCATION	BND	chr1	71776479	chr1	71776332	NEGR1	INTRON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	206,2	562,3	MantaBND:31612:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:41808:41808:3:0:0:0	TRANSLOCATION	BND	chr1	108699624	chr1	108700078	PRPF38B	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	256,1	724,2	MantaBND:0:41808:41808:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:41808:41808:4:1:0:0	TRANSLOCATION	BND	chr1	108699662	chr1	108700357	PRPF38B	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	203,1	617,2	MantaBND:0:41808:41808:4:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:41808:41808:3:0:0:1	TRANSLOCATION	BND	chr1	108700074	chr1	108699628	PRPF38B	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	256,1	724,2	MantaBND:0:41808:41808:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:41808:41808:4:1:0:1	TRANSLOCATION	BND	chr1	108700353	chr1	108699666	PRPF38B	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	203,1	617,2	MantaBND:0:41808:41808:4:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:42341:42341:3:0:0:0	TRANSLOCATION	BND	chr1	151424037	chr1	151424139	POGZ	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	713,2	2023,2	MantaBND:0:42341:42341:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:42341:42341:3:0:0:1	TRANSLOCATION	BND	chr1	151424135	chr1	151424041	POGZ	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	713,2	2023,2	MantaBND:0:42341:42341:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:32842:0:0:0:0:0:1	TRANSLOCATION	BND	chr1	159014846	chr1	159015024	IFI16	EXON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	333,2	877,2	MantaBND:32842:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:32842:0:0:0:0:0:0	TRANSLOCATION	BND	chr1	159015015	chr1	159014855	IFI16	INTRON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	333,2	877,2	MantaBND:32842:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:43246:43246:3:1:0:0	TRANSLOCATION	BND	chr1	179126712	chr1	179126927	ABL2	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	447,2	980,2	MantaBND:0:43246:43246:3:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:43246:43246:3:1:0:1	TRANSLOCATION	BND	chr1	179126920	chr1	179126719	ABL2	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	447,2	980,2	MantaBND:0:43246:43246:3:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:33576:0:0:1:0:0:0	TRANSLOCATION	BND	chr1	186346283	chr1	186346428	TPR	EXON:23	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	87,2	226,3	MantaBND:33576:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:33576:0:0:1:0:0:1	TRANSLOCATION	BND	chr1	186346420	chr1	186346291	TPR	INTRON:22	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	87,2	226,3	MantaBND:33576:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31164:31164:0:1:0:0	TRANSLOCATION	BND	chr1	198754318	chr1	198754520	PTPRC	EXON:32	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	213,2	464,6	MantaBND:0:31164:31164:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31164:31164:0:1:0:1	TRANSLOCATION	BND	chr1	198754515	chr1	198754323	PTPRC	INTRON:32	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	213,2	464,6	MantaBND:0:31164:31164:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:23992:23993:0:1:0:1	TRANSLOCATION	BND	chr1	241499263	chr7	95495824	ASB4&FH	INTRON:9	-	INTERGENIC	INTERGENIC	+	.	MinSomaticScore	0	no	.	551,2	1359,4	MantaBND:0:23992:23993:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:44410:44410:2:1:0:0	TRANSLOCATION	BND	chr1	246987738	chr1	246987917	ZNF670-ZNF695&ZNF695	EXON:4	+	ZNF695	EXON:4	-	.	MinSomaticScore	0	no	.	381,2	1020,2	MantaBND:0:44410:44410:2:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:44410:44410:2:1:0:1	TRANSLOCATION	BND	chr1	246987910	chr1	246987745	ZNF670-ZNF695&ZNF695	EXON:4	+	ZNF695	EXON:4	-	.	MinSomaticScore	0	no	.	381,2	1020,2	MantaBND:0:44410:44410:2:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27559:0:0:4:0:0:0	TRANSLOCATION	BND	chr2	39035310	chr2	39035412	SOS1	EXON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	336,2	948,4	MantaBND:27559:0:0:4:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27559:0:0:4:0:0:1	TRANSLOCATION	BND	chr2	39035408	chr2	39035314	SOS1	EXON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	336,2	948,4	MantaBND:27559:0:0:4:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27575:0:2:0:2:0:1	TRANSLOCATION	BND	chr2	39345983	chr2	39346161	MAP4K3	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	576,0	1332,13	MantaBND:27575:0:2:0:2:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27575:0:2:0:2:0:0	TRANSLOCATION	BND	chr2	39346155	chr2	39345989	MAP4K3	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	576,0	1332,13	MantaBND:27575:0:2:0:2:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27680:0:0:0:1:0:1	TRANSLOCATION	BND	chr2	47375128	chr2	47375274	EPCAM	INTRON:4	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	119,4	490,12	MantaBND:27680:0:0:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:27680:0:0:0:1:0:0	TRANSLOCATION	BND	chr2	47375264	chr2	47375138	EPCAM	EXON:5	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	119,4	490,12	MantaBND:27680:0:0:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:37537:37537:3:0:0:1	TRANSLOCATION	BND	chr2	71426724	chr2	71426845	ZNF638	EXON:24	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	194,2	695,2	MantaBND:0:37537:37537:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:37537:37537:3:0:0:0	TRANSLOCATION	BND	chr2	71426836	chr2	71426733	ZNF638	EXON:24	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	194,2	695,2	MantaBND:0:37537:37537:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:28124:0:0:1:1:0:0	TRANSLOCATION	BND	chr2	84705459	chr2	84705606	DNAH6	INTRON:51	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	164,2	615,8	MantaBND:28124:0:0:1:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:28124:0:0:1:1:0:1	TRANSLOCATION	BND	chr2	84705597	chr2	84705468	DNAH6	EXON:52	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	164,2	615,8	MantaBND:28124:0:0:1:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:28272:0:0:0:0:0:1	TRANSLOCATION	BND	chr2	99018293	chr2	99018409	TSGA10	EXON:16	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	125,2	405,2	MantaBND:28272:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:28272:0:0:0:0:0:0	TRANSLOCATION	BND	chr2	99018402	chr2	99018300	TSGA10	INTRON:15	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	125,2	405,2	MantaBND:28272:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:38891:38891:2:0:0:0	TRANSLOCATION	BND	chr2	178631120	chr2	178631224	TTN&TTN-AS1	EXON:237	+	TTN	EXON:237	-	.	MinSomaticScore	0	no	.	218,2	760,4	MantaBND:0:38891:38891:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:38891:38891:2:0:0:1	TRANSLOCATION	BND	chr2	178631217	chr2	178631127	TTN&TTN-AS1	EXON:237	+	TTN	EXON:237	-	.	MinSomaticScore	0	no	.	218,2	760,4	MantaBND:0:38891:38891:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:29727:0:0:0:0:0:0	TRANSLOCATION	BND	chr2	196001746	chr2	196001847	DNAH7	EXON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	258,4	735,12	MantaBND:29727:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:29727:0:0:0:0:0:1	TRANSLOCATION	BND	chr2	196001839	chr2	196001754	DNAH7	EXON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	258,4	735,12	MantaBND:29727:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:29765:0:0:1:0:0:1	TRANSLOCATION	BND	chr2	196845894	chr2	196846002	PGAP1	EXON:23	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	133,2	383,4	MantaBND:29765:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:29765:0:0:1:0:0:0	TRANSLOCATION	BND	chr2	196845994	chr2	196845902	PGAP1	EXON:23	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	133,2	383,4	MantaBND:29765:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30025:1:1:0:0:0:1	TRANSLOCATION	BND	chr2	208243601	chr2	208243738	IDH1	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	186,2	500,4	MantaBND:30025:1:1:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30025:1:1:0:0:0:0	TRANSLOCATION	BND	chr2	208243732	chr2	208243607	IDH1	INTRON:5	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	186,2	500,4	MantaBND:30025:1:1:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30113:0:0:0:1:0:1	TRANSLOCATION	BND	chr2	214797177	chr2	214797284	BARD1	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	118,2	286,5	MantaBND:30113:0:0:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:30113:0:0:0:1:0:0	TRANSLOCATION	BND	chr2	214797276	chr2	214797185	BARD1	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	118,2	286,5	MantaBND:30113:0:0:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:24510:0:0:3:0:0:0	TRANSLOCATION	BND	chr3	17010378	chr3	17010488	PLCL2	EXON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	236,2	710,3	MantaBND:24510:0:0:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:24510:0:0:3:0:0:1	TRANSLOCATION	BND	chr3	17010479	chr3	17010387	PLCL2	EXON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	236,2	710,3	MantaBND:24510:0:0:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:33741:33741:0:1:0:1	TRANSLOCATION	BND	chr3	31797842	chr3	31797970	OSBPL10	INTRON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	162,2	531,2	MantaBND:0:33741:33741:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:33741:33741:0:1:0:0	TRANSLOCATION	BND	chr3	31797961	chr3	31797851	OSBPL10	INTRON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	162,2	531,2	MantaBND:0:33741:33741:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:25202:0:0:0:0:0:1	TRANSLOCATION	BND	chr3	63652750	chr3	63652846	SNTN	EXON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	287,2	710,4	MantaBND:25202:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:25202:0:0:0:0:0:0	TRANSLOCATION	BND	chr3	63652840	chr3	63652756	SNTN	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	287,2	710,4	MantaBND:25202:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35253:35253:6:0:0:1	TRANSLOCATION	BND	chr3	130471954	chr3	130472179	COL6A5	INTRON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	242,2	551,4	MantaBND:0:35253:35253:6:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35253:35253:6:0:0:0	TRANSLOCATION	BND	chr3	130472174	chr3	130471959	COL6A5	INTRON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	242,2	551,4	MantaBND:0:35253:35253:6:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:26615:0:0:0:0:0:0	TRANSLOCATION	BND	chr3	170392382	chr3	170392503	SKIL	EXON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	103,2	332,4	MantaBND:26615:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:26615:0:0:0:0:0:1	TRANSLOCATION	BND	chr3	170392496	chr3	170392389	SKIL	EXON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	103,2	332,4	MantaBND:26615:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35952:35955:0:2:0:0	TRANSLOCATION	BND	chr3	185482897	chr3	185487837	MAP3K13&TMEM41A	EXON:14	+	MAP3K13	EXON:14	-	.	MinSomaticScore	0	no	.	847,1	2006,2	MantaBND:0:35952:35955:0:2:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35952:35955:1:4:0:0	TRANSLOCATION	BND	chr3	185483147	chr3	185487712	MAP3K13&TMEM41A	EXON:14	+	MAP3K13	EXON:14	-	.	MinSomaticScore	0	no	.	532,1	1817,4	MantaBND:0:35952:35955:1:4:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35952:35955:1:4:0:1	TRANSLOCATION	BND	chr3	185487705	chr3	185483154	MAP3K13&TMEM41A	EXON:14	+	MAP3K13	EXON:14	-	.	MinSomaticScore	0	no	.	532,1	1817,4	MantaBND:0:35952:35955:1:4:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:35952:35955:0:2:0:1	TRANSLOCATION	BND	chr3	185487832	chr3	185482902	MAP3K13&TMEM41A	EXON:14	+	MAP3K13	EXON:14	-	.	MinSomaticScore	0	no	.	847,1	2006,2	MantaBND:0:35952:35955:0:2:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:26954:0:0:0:0:0:1	TRANSLOCATION	BND	chr3	195381861	chr3	195382041	ACAP2	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	202,1	395,5	MantaBND:26954:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:26954:0:0:0:0:0:0	TRANSLOCATION	BND	chr3	195382030	chr3	195381872	ACAP2	INTRON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	202,1	395,5	MantaBND:26954:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31249:31249:0:0:0:1	TRANSLOCATION	BND	chr4	161989	chr4	162142	ZNF718	EXON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	106,2	241,2	MantaBND:0:31249:31249:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31249:31249:0:0:0:0	TRANSLOCATION	BND	chr4	162139	chr4	161992	ZNF718	EXON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	106,2	241,2	MantaBND:0:31249:31249:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31523:31523:1:0:0:0	TRANSLOCATION	BND	chr4	20528840	chr4	20528984	SLIT2	INTRON:16	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	405,3	1100,3	MantaBND:0:31523:31523:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31523:31523:1:0:0:1	TRANSLOCATION	BND	chr4	20528978	chr4	20528846	SLIT2	EXON:17	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	405,3	1100,3	MantaBND:0:31523:31523:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31535:31535:1:0:0:0	TRANSLOCATION	BND	chr4	20596396	chr4	20596559	SLIT2	INTRON:33	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	299,2	821,4	MantaBND:0:31535:31535:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:31535:31535:1:0:0:1	TRANSLOCATION	BND	chr4	20596551	chr4	20596404	SLIT2	EXON:34	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	299,2	821,4	MantaBND:0:31535:31535:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:22773:0:0:1:0:0:0	TRANSLOCATION	BND	chr4	71466482	chr4	71466560	SLC4A4	EXON:13	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	373,1	1034,8	MantaBND:22773:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:22773:0:0:1:0:0:1	TRANSLOCATION	BND	chr4	71466556	chr4	71466486	SLC4A4	EXON:13	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	373,1	1034,8	MantaBND:22773:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:32419:32419:23:1:0:1	TRANSLOCATION	BND	chr4	105277043	chr4	105277208	TET2	EXON:11	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	303,0	1352,11	MantaBND:0:32419:32419:23:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:32419:32419:23:1:0:0	TRANSLOCATION	BND	chr4	105277204	chr4	105277047	TET2	EXON:11	+	INTERGENIC	INTERGENIC	-	.	PASS	0	no	.	303,0	1352,11	MantaBND:0:32419:32419:23:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23350:0:0:2:0:0:0	TRANSLOCATION	BND	chr4	107910375	chr4	107910546	CYP2U1-AS1&SGMS2	EXON:6	+	SGMS2	EXON:6	-	.	MinSomaticScore	0	no	.	376,2	906,4	MantaBND:23350:0:0:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23350:0:0:2:0:0:1	TRANSLOCATION	BND	chr4	107910540	chr4	107910381	CYP2U1-AS1&SGMS2	EXON:6	+	SGMS2	EXON:6	-	.	MinSomaticScore	0	no	.	376,2	906,4	MantaBND:23350:0:0:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23837:0:0:0:0:0:0	TRANSLOCATION	BND	chr4	147657874	chr4	147658079	PRMT9&TMEM184C	EXON:8	+	PRMT9	EXON:8	-	.	MinSomaticScore	0	no	.	84,2	241,3	MantaBND:23837:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23837:0:0:0:0:0:1	TRANSLOCATION	BND	chr4	147658073	chr4	147657880	PRMT9&TMEM184C	INTRON:7	+	PRMT9	INTRON:7	-	.	MinSomaticScore	0	no	.	84,2	241,3	MantaBND:23837:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23888:0:0:0:0:0:0	TRANSLOCATION	BND	chr4	152910228	chr4	152910439	ARFIP1	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	178,2	445,4	MantaBND:23888:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:23888:0:0:0:0:0:1	TRANSLOCATION	BND	chr4	152910432	chr4	152910235	ARFIP1	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	178,2	445,4	MantaBND:23888:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:33087:33087:1:0:0:0	TRANSLOCATION	BND	chr4	186617001	chr4	186617108	FAT1	INTRON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	179,2	546,4	MantaBND:0:33087:33087:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:33087:33087:1:0:0:1	TRANSLOCATION	BND	chr4	186617101	chr4	186617008	FAT1	EXON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	179,2	546,4	MantaBND:0:33087:33087:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19850:0:0:0:0:0:1	TRANSLOCATION	BND	chr5	23521079	chr5	23521197	PRDM9	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	243,2	729,2	MantaBND:19850:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19850:0:0:0:0:0:0	TRANSLOCATION	BND	chr5	23521191	chr5	23521085	PRDM9	INTRON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	243,2	729,2	MantaBND:19850:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20085:0:0:0:0:0:0	TRANSLOCATION	BND	chr5	39315726	chr5	39315845	C9	INTRON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	178,3	543,5	MantaBND:20085:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20085:0:0:0:0:0:1	TRANSLOCATION	BND	chr5	39315836	chr5	39315735	C9	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	178,3	543,5	MantaBND:20085:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20176:0:0:1:0:0:0	TRANSLOCATION	BND	chr5	52893688	chr5	52893860	ITGA1	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	143,2	365,4	MantaBND:20176:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20176:0:0:1:0:0:1	TRANSLOCATION	BND	chr5	52893856	chr5	52893692	ITGA1	INTRON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	143,2	365,4	MantaBND:20176:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20352:0:0:1:1:0:1	TRANSLOCATION	BND	chr5	65518296	chr5	65518504	CENPK	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	129,1	381,3	MantaBND:20352:0:0:1:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20352:0:0:1:1:0:0	TRANSLOCATION	BND	chr5	65518496	chr5	65518304	CENPK	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	129,1	381,3	MantaBND:20352:0:0:1:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20568:0:0:1:0:0:1	TRANSLOCATION	BND	chr5	75694670	chr5	75694776	POC5	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	171,2	499,4	MantaBND:20568:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:20568:0:0:1:0:0:0	TRANSLOCATION	BND	chr5	75694770	chr5	75694676	POC5	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	171,2	499,4	MantaBND:20568:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:21020:0:0:0:0:0:1	TRANSLOCATION	BND	chr5	103149360	chr5	103149503	PPIP5K2	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	53,2	165,4	MantaBND:21020:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:21020:0:0:0:0:0:0	TRANSLOCATION	BND	chr5	103149494	chr5	103149369	PPIP5K2	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	53,2	165,4	MantaBND:21020:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:0:26977:26979:3:0:0	DUPLICATION	DUP	chr6	32530429	chr6	32590007	HLA-DRB1&HLA-DRB6&RNU1-61P	GENE	.	RNU1-61P	EXON:1	.	.	MinSomaticScore	59578	yes	.	50,5	.	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18208:0:1:0:1:0:1	TRANSLOCATION	BND	chr6	65295936	chr6	65296093	EYS	EXON:12	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	164,2	555,2	MantaBND:18208:0:1:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18208:0:1:0:1:0:0	TRANSLOCATION	BND	chr6	65296086	chr6	65295943	EYS	EXON:12	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	164,2	555,2	MantaBND:18208:0:1:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18438:0:0:3:0:0:0	TRANSLOCATION	BND	chr6	85513832	chr6	85513993	ENSG00000271793	EXON:37	+	ENSG00000271793&SNX14	EXON:37	-	.	MinSomaticScore	0	no	.	122,2	401,3	MantaBND:18438:0:0:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18438:0:0:3:0:0:1	TRANSLOCATION	BND	chr6	85513984	chr6	85513841	ENSG00000271793	INTRON:36	+	ENSG00000271793&SNX14	INTRON:36	-	.	MinSomaticScore	0	no	.	122,2	401,3	MantaBND:18438:0:0:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18976:0:0:0:2:0:0	TRANSLOCATION	BND	chr6	122412419	chr6	122412623	HSF2	EXON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	180,3	498,3	MantaBND:18976:0:0:0:2:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:18976:0:0:0:2:0:1	TRANSLOCATION	BND	chr6	122412617	chr6	122412425	HSF2	INTRON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	180,3	498,3	MantaBND:18976:0:0:0:2:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:19258:0:2:0:0:0	DUPLICATION	DUP	chr6	137203457	chr6	137204406	IFNGR1	EXON:4	.	INTERGENIC	INTERGENIC	.	.	MinSomaticScore	949	no	.	295,1	812,8	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:28774:28774:1:0:0:0	TRANSLOCATION	BND	chr6	139244639	chr6	139244781	ENSG00000272446&TXLNB	EXON:9	+	TXLNB	EXON:9	-	.	MinSomaticScore	0	no	.	128,2	375,4	MantaBND:0:28774:28774:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:28774:28774:1:0:0:1	TRANSLOCATION	BND	chr6	139244775	chr6	139244645	ENSG00000272446&TXLNB	INTRON:8	+	TXLNB	INTRON:8	-	.	MinSomaticScore	0	no	.	128,2	375,4	MantaBND:0:28774:28774:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19609:0:0:1:0:0:1	TRANSLOCATION	BND	chr6	159780575	chr6	159780698	TCP1	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	55,2	188,2	MantaBND:19609:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19609:0:0:1:0:0:0	TRANSLOCATION	BND	chr6	159780691	chr6	159780582	TCP1	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	55,2	188,2	MantaBND:19609:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19674:0:0:0:0:0:0	TRANSLOCATION	BND	chr6	167922760	chr6	167922884	AFDN	INTRON:20	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	77,2	249,5	MantaBND:19674:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:19674:0:0:0:0:0:1	TRANSLOCATION	BND	chr6	167922877	chr6	167922767	AFDN	EXON:21	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	77,2	249,5	MantaBND:19674:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:15655:0:0:0:0:0:0	TRANSLOCATION	BND	chr7	32543028	chr7	32543195	AVL9	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	231,3	613,3	MantaBND:15655:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:15655:0:0:0:0:0:1	TRANSLOCATION	BND	chr7	32543186	chr7	32543037	AVL9	EXON:2	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	231,3	613,3	MantaBND:15655:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16073:1:1:2:0:0:0	TRANSLOCATION	BND	chr7	88284043	chr7	88284798	ENSG00000228113&STEAP4	EXON:2	+	STEAP4	EXON:2	-	.	MinSomaticScore	0	no	.	214,1	543,2	MantaBND:16073:1:1:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16073:1:1:4:0:0:0	TRANSLOCATION	BND	chr7	88284175	chr7	88284785	ENSG00000228113&STEAP4	EXON:2	+	STEAP4	EXON:2	-	.	MinSomaticScore	0	no	.	225,1	553,2	MantaBND:16073:1:1:4:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16073:1:1:4:0:0:1	TRANSLOCATION	BND	chr7	88284781	chr7	88284179	ENSG00000228113&STEAP4	INTRON:1	+	STEAP4	INTRON:1	-	.	MinSomaticScore	0	no	.	225,1	553,2	MantaBND:16073:1:1:4:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16073:1:1:2:0:0:1	TRANSLOCATION	BND	chr7	88284795	chr7	88284046	ENSG00000228113&STEAP4	INTRON:1	+	STEAP4	INTRON:1	-	.	MinSomaticScore	0	no	.	214,1	543,2	MantaBND:16073:1:1:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:23830:23830:9:0:0:0	TRANSLOCATION	BND	chr7	89333608	chr7	89333703	ZNF804B	EXON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	272,2	849,7	MantaBND:0:23830:23830:9:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:23830:23830:9:0:0:1	TRANSLOCATION	BND	chr7	89333698	chr7	89333613	ZNF804B	EXON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	272,2	849,7	MantaBND:0:23830:23830:9:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16112:0:0:0:1:0:0	TRANSLOCATION	BND	chr7	91994722	chr7	91994835	AKAP9	EXON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	121,3	395,9	MantaBND:16112:0:0:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:16112:0:0:0:1:0:1	TRANSLOCATION	BND	chr7	91994826	chr7	91994731	AKAP9	INTRON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	121,3	395,9	MantaBND:16112:0:0:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:23992:23993:0:1:0:0	TRANSLOCATION	BND	chr7	95495824	chr1	241499263	ASB4&FH	EXON:2	-	INTERGENIC	INTERGENIC	+	.	MinSomaticScore	0	no	.	551,2	1359,4	MantaBND:0:23992:23993:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36495:0:0:0:0:0:0	TRANSLOCATION	BND	chr8	28112869	chr8	28113049	ELP3	INTRON:6	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	60,2	184,3	MantaBND:36495:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36495:0:0:0:0:0:1	TRANSLOCATION	BND	chr8	28113039	chr8	28112879	ELP3	EXON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	60,2	184,3	MantaBND:36495:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:47972:47972:0:1:0	DELETION	DEL	chr8	42330980	chr8	42331032	IKBKB	EXON:22	.	INTERGENIC	INTERGENIC	.	.	PASS	-52	no	.	294,0	1362,20	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36959:0:0:0:0:0:0	TRANSLOCATION	BND	chr8	68053072	chr8	68053185	PREX2	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	312,2	930,4	MantaBND:36959:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36959:0:0:0:0:0:1	TRANSLOCATION	BND	chr8	68053179	chr8	68053078	PREX2	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	312,2	930,4	MantaBND:36959:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:48725:48725:1:1:0	DELETION	DEL	chr8	116874143	chr8	116874414	RAD21-AS1	INTERGENIC	.	MIR3610	INTERGENIC	.	.	PASS	-271	no	.	804,7	2053,21	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35217:0:0:2:1:0:1	TRANSLOCATION	BND	chr9	37407563	chr9	37407715	INTERGENIC	INTERGENIC	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	279,1	805,8	MantaBND:35217:0:0:2:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35217:0:0:2:1:0:0	TRANSLOCATION	BND	chr9	37407709	chr9	37407569	INTERGENIC	INTERGENIC	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	279,1	805,8	MantaBND:35217:0:0:2:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35352:0:0:1:0:0:0	TRANSLOCATION	BND	chr9	77275526	chr9	77275627	VPS13A	EXON:25	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	128,1	394,5	MantaBND:35352:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35352:0:0:1:0:0:1	TRANSLOCATION	BND	chr9	77275619	chr9	77275534	VPS13A	EXON:25	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	128,1	394,5	MantaBND:35352:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35451:0:0:0:0:0:0	TRANSLOCATION	BND	chr9	85977346	chr9	85977445	NAA35	INTRON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	183,2	506,2	MantaBND:35451:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:35451:0:0:0:0:0:1	TRANSLOCATION	BND	chr9	85977438	chr9	85977353	NAA35	EXON:10	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	183,2	506,2	MantaBND:35451:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:35947:0:1:0:0:0	DELETION	DEL	chr9	122724802	chr9	122750755	OR1L4&OR1L6	GENE	.	OR1L6	EXON:1	.	.	PASS	-25953	yes	.	438,17	.	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36021:0:0:0:1:0:1	TRANSLOCATION	BND	chr9	127354231	chr9	127354346	GARNL3	INTRON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	277,2	717,4	MantaBND:36021:0:0:0:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:36021:0:0:0:1:0:0	TRANSLOCATION	BND	chr9	127354339	chr9	127354238	GARNL3	EXON:19	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	277,2	717,4	MantaBND:36021:0:0:0:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:8750:8750:2:0:0:0	TRANSLOCATION	BND	chr10	87957700	chr10	87957828	PTEN	INTRON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	182,2	605,4	MantaBND:0:8750:8750:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:8750:8750:2:0:0:1	TRANSLOCATION	BND	chr10	87957820	chr10	87957708	PTEN	INTRON:7	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	182,2	605,4	MantaBND:0:8750:8750:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:6984:0:0:0:0:0:0	TRANSLOCATION	BND	chr10	94593398	chr10	94593515	HELLS	INTRON:18	+	ENSG00000244332&HELLS	INTRON:18	-	.	MinSomaticScore	0	no	.	205,2	553,4	MantaBND:6984:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:6984:0:0:0:0:0:1	TRANSLOCATION	BND	chr10	94593511	chr10	94593402	HELLS	EXON:19	+	ENSG00000244332&HELLS	EXON:19	-	.	MinSomaticScore	0	no	.	205,2	553,4	MantaBND:6984:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:7338:0:0:1:0:0:1	TRANSLOCATION	BND	chr10	115266772	chr10	115266952	ATRNL1	INTRON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	161,2	458,2	MantaBND:7338:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:7338:0:0:1:0:0:0	TRANSLOCATION	BND	chr10	115266945	chr10	115266779	ATRNL1	EXON:12	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	161,2	458,2	MantaBND:7338:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:9373:9373:2:0:0:1	TRANSLOCATION	BND	chr10	121479080	chr10	121479219	FGFR2	GENE	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	407,2	1226,2	MantaBND:0:9373:9373:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:9373:9373:2:0:0:0	TRANSLOCATION	BND	chr10	121479214	chr10	121479085	FGFR2	GENE	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	407,2	1226,2	MantaBND:0:9373:9373:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:5278:5278:38:0:0	DELETION	DEL	chr11	1098154	chr11	1099439	MUC2	INTERGENIC	.	INTERGENIC	INTERGENIC	.	.	MinSomaticScore	-1285	yes	.	224,11	.	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:4361:0:0:1:1:0:0	TRANSLOCATION	BND	chr11	9497612	chr11	9497716	ZNF143	INTRON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	131,1	437,3	MantaBND:4361:0:0:1:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:4361:0:0:1:1:0:1	TRANSLOCATION	BND	chr11	9497711	chr11	9497617	ZNF143	EXON:10	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	131,1	437,3	MantaBND:4361:0:0:1:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:7393:7393:2:0:0:1	TRANSLOCATION	BND	chr11	112094653	chr11	112094808	ENSG00000255292&SDHD	INTRON:3	+	SDHD	INTRON:3	-	.	MinSomaticScore	0	no	.	273,3	906,5	MantaBND:0:7393:7393:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:7393:7393:2:0:0:0	TRANSLOCATION	BND	chr11	112094797	chr11	112094664	ENSG00000255292&SDHD	INTRON:3	+	SDHD	INTRON:3	-	.	MinSomaticScore	0	no	.	273,3	906,5	MantaBND:0:7393:7393:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:2157:0:0:0:0:0:1	TRANSLOCATION	BND	chr12	9168979	chr12	9169170	PZP	INTRON:16	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	89,2	208,5	MantaBND:2157:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:2157:0:0:0:0:0:0	TRANSLOCATION	BND	chr12	9169160	chr12	9168989	PZP	INTRON:16	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	89,2	208,5	MantaBND:2157:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:3729:3729:7:0:0:0	TRANSLOCATION	BND	chr12	25053079	chr12	25053236	IRAG2	INTRON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	338,2	1056,4	MantaBND:0:3729:3729:7:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:3729:3729:7:0:0:1	TRANSLOCATION	BND	chr12	25053227	chr12	25053088	IRAG2	INTRON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	338,2	1056,4	MantaBND:0:3729:3729:7:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:0:3734:3734:12:0:0	DUPLICATION	DUP	chr12	25208091	chr12	25209664	ETFRF1&KRAS	GENE	.	KRAS	EXON:6	.	.	MinSomaticScore	1573	no	.	367,2	1203,4	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:2587:0:0:0:0:0:1	TRANSLOCATION	BND	chr12	30735145	chr12	30735299	CAPRIN2	EXON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	126,2	444,2	MantaBND:2587:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:2587:0:0:0:0:0:0	TRANSLOCATION	BND	chr12	30735292	chr12	30735152	CAPRIN2	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	126,2	444,2	MantaBND:2587:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:4257:4257:0:0:0:0	TRANSLOCATION	BND	chr12	55822684	chr12	55822824	ENSG00000257390	EXON:4	+	DNAJC14&ENSG00000257390	EXON:4	-	.	MinSomaticScore	0	no	.	230,2	741,4	MantaBND:0:4257:4257:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:4257:4257:0:0:0:1	TRANSLOCATION	BND	chr12	55822819	chr12	55822689	ENSG00000257390	INTRON:3	+	DNAJC14&ENSG00000257390	INTRON:3	-	.	MinSomaticScore	0	no	.	230,2	741,4	MantaBND:0:4257:4257:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:3872:0:0:0:0:0:0	TRANSLOCATION	BND	chr12	111681514	chr12	111681640	BRAP	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	93,2	238,4	MantaBND:3872:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:3872:0:0:0:0:0:1	TRANSLOCATION	BND	chr12	111681634	chr12	111681520	BRAP	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	93,2	238,4	MantaBND:3872:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:4052:1:1:0:0:0:1	TRANSLOCATION	BND	chr12	122602842	chr12	122602959	KNTC1	EXON:47	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	144,3	424,5	MantaBND:4052:1:1:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:4052:1:1:0:0:0:0	TRANSLOCATION	BND	chr12	122602956	chr12	122602845	KNTC1	INTRON:47	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	144,3	424,5	MantaBND:4052:1:1:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:2057:2057:3:0:0:1	TRANSLOCATION	BND	chr13	32319212	chr13	32319344	BRCA2	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	373,2	1046,5	MantaBND:0:2057:2057:3:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:2057:2057:3:0:0:0	TRANSLOCATION	BND	chr13	32319339	chr13	32319217	BRCA2	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	373,2	1046,5	MantaBND:0:2057:2057:3:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1356:0:0:1:1:0:1	TRANSLOCATION	BND	chr13	32758058	chr13	32758155	PDS5B	INTRON:26	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	148,2	400,6	MantaBND:1356:0:0:1:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1356:0:0:1:1:0:0	TRANSLOCATION	BND	chr13	32758150	chr13	32758063	PDS5B	EXON:27	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	148,2	400,6	MantaBND:1356:0:0:1:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1510:0:0:0:0:0:1	TRANSLOCATION	BND	chr13	42198465	chr13	42198604	DGKH	INTRON:17	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	188,2	470,4	MantaBND:1510:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1510:0:0:0:0:0:0	TRANSLOCATION	BND	chr13	42198597	chr13	42198472	DGKH	INTRON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	188,2	470,4	MantaBND:1510:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1683:1:1:5:0:0:0	TRANSLOCATION	BND	chr13	60529022	chr13	60529153	TDRD3	EXON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	157,2	543,4	MantaBND:1683:1:1:5:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:1683:1:1:5:0:0:1	TRANSLOCATION	BND	chr13	60529147	chr13	60529028	TDRD3	EXON:11	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	157,2	543,4	MantaBND:1683:1:1:5:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:0:16231:16232:0:1:0	DUPLICATION	DUP	chr14	65742100	chr14	65742378	FUT8	EXON:10	.	INTERGENIC	INTERGENIC	.	.	MinSomaticScore	278	no	.	226,2	593,4	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:11814:0:0:1:0:0:0	TRANSLOCATION	BND	chr14	67113028	chr14	67113157	GPHN	EXON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	299,2	809,6	MantaBND:11814:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:11814:0:0:1:0:0:1	TRANSLOCATION	BND	chr14	67113151	chr14	67113034	GPHN	EXON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	299,2	809,6	MantaBND:11814:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12123:0:0:1:0:0:1	TRANSLOCATION	BND	chr14	93294267	chr14	93294391	BTBD7	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	160,1	528,2	MantaBND:12123:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12123:0:0:5:0:0:1	TRANSLOCATION	BND	chr14	93294304	chr14	93294864	BTBD7	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	294,1	838,2	MantaBND:12123:0:0:5:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12123:0:0:1:0:0:0	TRANSLOCATION	BND	chr14	93294386	chr14	93294272	BTBD7	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	160,1	528,2	MantaBND:12123:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12123:0:0:5:0:0:0	TRANSLOCATION	BND	chr14	93294860	chr14	93294308	BTBD7	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	294,1	838,2	MantaBND:12123:0:0:5:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12137:0:0:2:0:0:1	TRANSLOCATION	BND	chr14	93686642	chr14	93686768	UNC79	EXON:45	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	351,1	1267,8	MantaBND:12137:0:0:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12137:0:0:2:0:0:0	TRANSLOCATION	BND	chr14	93686764	chr14	93686646	UNC79	INTRON:45	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	351,1	1267,8	MantaBND:12137:0:0:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12203:0:0:0:0:0:1	TRANSLOCATION	BND	chr14	96847227	chr14	96847363	VRK1	INTRON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	109,2	306,4	MantaBND:12203:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:12203:0:0:0:0:0:0	TRANSLOCATION	BND	chr14	96847355	chr14	96847235	VRK1	INTRON:5	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	109,2	306,4	MantaBND:12203:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:14148:14148:2:0:0:1	TRANSLOCATION	BND	chr15	44622044	chr15	44622244	SPG11	INTRON:13	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	104,2	324,3	MantaBND:0:14148:14148:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:14148:14148:2:0:0:0	TRANSLOCATION	BND	chr15	44622235	chr15	44622053	SPG11	EXON:13	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	104,2	324,3	MantaBND:0:14148:14148:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:10576:0:0:0:0:0:1	TRANSLOCATION	BND	chr15	55840453	chr15	55840544	NEDD4	EXON:17	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	167,2	487,4	MantaBND:10576:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:10576:0:0:0:0:0:0	TRANSLOCATION	BND	chr15	55840541	chr15	55840456	NEDD4	INTRON:16	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	167,2	487,4	MantaBND:10576:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:15491:15491:15:0:0:0	TRANSLOCATION	BND	chr15	92901210	chr15	92901347	CHD2&ENSG00000279765	INTRON:5	+	ENSG00000279765	INTRON:5	-	.	PASS	0	no	.	449,3	1353,4	MantaBND:0:15491:15491:15:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:15491:15491:15:0:0:1	TRANSLOCATION	BND	chr15	92901340	chr15	92901217	CHD2&ENSG00000279765	INTRON:5	+	ENSG00000279765	INTRON:5	-	.	PASS	0	no	.	449,3	1353,4	MantaBND:0:15491:15491:15:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:9733:0:0:0:0:0:0	TRANSLOCATION	BND	chr16	71771160	chr16	71771277	AP1G1	EXON:5	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	160,2	436,3	MantaBND:9733:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:9733:0:0:0:0:0:1	TRANSLOCATION	BND	chr16	71771271	chr16	71771166	AP1G1	INTRON:4	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	160,2	436,3	MantaBND:9733:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:9785:0:0:0:0:0:1	TRANSLOCATION	BND	chr16	75412440	chr16	75412566	CFDP1	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	210,2	659,4	MantaBND:9785:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:9785:0:0:0:0:0:0	TRANSLOCATION	BND	chr16	75412558	chr16	75412448	CFDP1	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	210,2	659,4	MantaBND:9785:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:8165:0:0:1:0:0:0	TRANSLOCATION	BND	chr17	39515590	chr17	39515760	CDK12	INTRON:8	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	141,2	440,3	MantaBND:8165:0:0:1:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:8165:0:0:1:0:0:1	TRANSLOCATION	BND	chr17	39515754	chr17	39515596	CDK12	EXON:9	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	141,2	440,3	MantaBND:8165:0:0:1:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:11130:11131:0:0:0:1	TRANSLOCATION	BND	chr17	43520798	chr17	43521416	DHX8	EXON:20	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	341,3	1000,3	MantaBND:0:11130:11131:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:11130:11131:0:0:0:0	TRANSLOCATION	BND	chr17	43521411	chr17	43520803	DHX8	EXON:21	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	341,3	1000,3	MantaBND:0:11130:11131:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:11559:11561:0:0:0	DELETION	DEL	chr17	61679312	chr17	61681774	BRIP1	EXON:20	.	INTERGENIC	INTERGENIC	.	.	MinSomaticScore	-2462	no	.	367,1	1000,8	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:19281:19281:25:0:0:0	TRANSLOCATION	BND	chr18	723937	chr18	724065	YES1	EXON:12	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	415,2	1149,5	MantaBND:0:19281:19281:25:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:19281:19281:25:0:0:1	TRANSLOCATION	BND	chr18	724062	chr18	723940	YES1	EXON:12	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	415,2	1149,5	MantaBND:0:19281:19281:25:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDUP:TANDEM:12340:0:1:0:2:0	DUPLICATION	DUP	chr19	2226814	chr19	2227023	PLEKHJ1	INTERGENIC	.	DOT1L	EXON:26	.	.	PASS	209	no	.	362,3	1032,6	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:16949:16949:2:1:0:0	TRANSLOCATION	BND	chr19	2853544	chr19	2853684	ENSG00000267063&ZNF555	EXON:4	+	ZNF555	EXON:4	-	.	MinSomaticScore	0	no	.	260,2	686,4	MantaBND:0:16949:16949:2:1:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:16949:16949:2:1:0:1	TRANSLOCATION	BND	chr19	2853676	chr19	2853552	ENSG00000267063&ZNF555	EXON:4	+	ZNF555	EXON:4	-	.	MinSomaticScore	0	no	.	260,2	686,4	MantaBND:0:16949:16949:2:1:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:12954:2:2:0:0:0	DELETION	DEL	chr19	50382554	chr19	50382626	NR1H2	EXON:10	.	POLD1	INTERGENIC	.	.	PASS	-72	no	.	90,0	341,106	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:19042:19042:4:0:0	DELETION	DEL	chr19	55517893	chr19	55518016	SSC5D	EXON:14	.	INTERGENIC	INTERGENIC	.	.	PASS	-123	no	.	231,0	501,12	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaDEL:0:21269:21269:3:0:0	DELETION	DEL	chr20	32438426	chr20	32438536	ASXL1	EXON:13	.	NOL4L	INTERGENIC	.	.	PASS	-110	no	.	607,0	2239,36	
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14545:0:0:0:0:0:0	TRANSLOCATION	BND	chr20	32833790	chr20	32833936	MAPRE1	EXON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	202,2	543,5	MantaBND:14545:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14545:0:0:0:0:0:1	TRANSLOCATION	BND	chr20	32833928	chr20	32833798	MAPRE1	INTRON:3	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	202,2	543,5	MantaBND:14545:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14907:0:0:0:0:0:0	TRANSLOCATION	BND	chr20	59900155	chr20	59900284	SYCP2	EXON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	177,2	461,3	MantaBND:14907:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14907:0:0:0:0:0:1	TRANSLOCATION	BND	chr20	59900279	chr20	59900160	SYCP2	EXON:18	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	177,2	461,3	MantaBND:14907:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:15190:0:0:0:0:0:1	TRANSLOCATION	BND	chr21	39210107	chr21	39210241	BRWD1	EXON:36	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	101,2	303,4	MantaBND:15190:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:15190:0:0:0:0:0:0	TRANSLOCATION	BND	chr21	39210236	chr21	39210112	BRWD1	INTRON:35	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	101,2	303,4	MantaBND:15190:0:0:0:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14010:0:0:2:0:0:1	TRANSLOCATION	BND	chr22	29613589	chr22	29613729	NF2	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	379,2	916,7	MantaBND:14010:0:0:2:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:14010:0:0:2:0:0:0	TRANSLOCATION	BND	chr22	29613722	chr22	29613596	NF2	INTRON:1	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	379,2	916,7	MantaBND:14010:0:0:2:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:262:262:5:0:0:1	TRANSLOCATION	BND	chrX	23001461	chrX	23001596	DDX53&ENSG00000289638	EXON:1	+	DDX53&ENSG00000289084	EXON:1	-	.	MinSomaticScore	0	no	.	203,2	575,2	MantaBND:0:262:262:5:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:0:262:262:5:0:0:0	TRANSLOCATION	BND	chrX	23001590	chrX	23001467	DDX53&ENSG00000289638	EXON:1	+	DDX53&ENSG00000289084	EXON:1	-	.	MinSomaticScore	0	no	.	203,2	575,2	MantaBND:0:262:262:5:0:0:1
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:578:0:0:0:0:0:1	TRANSLOCATION	BND	chrX	85264291	chrX	85264448	ZNF711	EXON:5	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	77,2	224,3	MantaBND:578:0:0:0:0:0:0
1136_85O-T1-TDNA-1_A23WJ5GLT4_1	MantaBND:578:0:0:0:0:0:0	TRANSLOCATION	BND	chrX	85264440	chrX	85264299	ZNF711	INTRON:5	+	INTERGENIC	INTERGENIC	-	.	MinSomaticScore	0	no	.	77,2	224,3	MantaBND:578:0:0:0:0:0:1