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- Filename
- 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.sv.hmnz.tsv
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- s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_dna/hmnz_cgp_dna_exp0035__70824045--20260606-022813/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/variants/dna_fusions/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.sv.hmnz.tsv
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- hmnz-cgp-dna-exp0035-20260606-022813
- Published
- Jun 05, 2026 7:30 PM
Content
View in new tab| sample | sv_id | sv_type | svtype_standard | chr1 | pos1 | chr2 | pos2 | gene1 | region1 | strand1 | gene2 | region2 | strand2 | qual | filter | svlen | imprecise | tumor_gt | tumor_pr | tumor_sr | mate_id |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:51328:51328:1:0:0:0 | TRANSLOCATION | BND | chr1 | 56723422 | chr1 | 56723641 | FYB2 | INTRON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 38,2 | 138,3 | MantaBND:1:51328:51328:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:51328:51328:1:0:0:1 | TRANSLOCATION | BND | chr1 | 56723635 | chr1 | 56723428 | FYB2 | EXON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 38,2 | 138,3 | MantaBND:1:51328:51328:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:54006:54006:5:0:0:1 | TRANSLOCATION | BND | chr1 | 197199682 | chr1 | 197199866 | ZBTB41 | EXON:2 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 260,0 | 530,7 | MantaBND:1:54006:54006:5:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:54006:54006:5:0:0:0 | TRANSLOCATION | BND | chr1 | 197199860 | chr1 | 197199688 | ZBTB41 | EXON:2 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 260,0 | 530,7 | MantaBND:1:54006:54006:5:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:54164:54164:22:2:0:0 | TRANSLOCATION | BND | chr1 | 202016884 | chr1 | 202016997 | ELF3 | GENE | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 723,3 | 1664,6 | MantaBND:1:54164:54164:22:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:54164:54164:22:2:0:1 | TRANSLOCATION | BND | chr1 | 202016988 | chr1 | 202016893 | ELF3 | GENE | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 723,3 | 1664,6 | MantaBND:1:54164:54164:22:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaDUP:TANDEM:1:45803:45803:18:1:0 | DUPLICATION | DUP | chr2 | 25738740 | chr2 | 25739121 | ASXL2 | EXON:13 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 381 | no | . | 603,2 | 1127,4 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:9884:0:0:0:0:0:1 | TRANSLOCATION | BND | chr2 | 39007147 | chr2 | 39007295 | SOS1 | EXON:16 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 227,3 | 564,4 | MantaBND:9884:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:9884:0:0:0:0:0:0 | TRANSLOCATION | BND | chr2 | 39007291 | chr2 | 39007151 | SOS1 | INTRON:15 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 227,3 | 564,4 | MantaBND:9884:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:10314:0:0:0:0:0:1 | TRANSLOCATION | BND | chr2 | 135135564 | chr2 | 135135701 | RAB3GAP1 | EXON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 194,3 | 491,4 | MantaBND:10314:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:10314:0:0:0:0:0:0 | TRANSLOCATION | BND | chr2 | 135135697 | chr2 | 135135568 | RAB3GAP1 | EXON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 194,3 | 491,4 | MantaBND:10314:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:10337:0:0:0:0:0:1 | TRANSLOCATION | BND | chr2 | 140239433 | chr2 | 140239558 | LRP1B | INTRON:88 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 203,2 | 410,3 | MantaBND:10337:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:10337:0:0:0:0:0:0 | TRANSLOCATION | BND | chr2 | 140239553 | chr2 | 140239438 | LRP1B | INTRON:87 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 203,2 | 410,3 | MantaBND:10337:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:8822:0:0:0:0:0:0 | TRANSLOCATION | BND | chr3 | 23964938 | chr3 | 23965075 | NR1D2 | INTRON:5 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 252,4 | 504,4 | MantaBND:8822:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:8822:0:0:0:0:0:1 | TRANSLOCATION | BND | chr3 | 23965071 | chr3 | 23964942 | NR1D2 | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 252,4 | 504,4 | MantaBND:8822:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:45143:45143:2:0:0:1 | TRANSLOCATION | BND | chr3 | 185329116 | chr3 | 185329249 | MAP3K13 | GENE | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 416,2 | 616,1 | MantaBND:1:45143:45143:2:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:45143:45143:4:1:0:0 | TRANSLOCATION | BND | chr3 | 185329134 | chr3 | 185329330 | MAP3K13 | GENE | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 509,1 | 323,2 | MantaBND:1:45143:45143:4:1:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:45143:45143:2:0:0:0 | TRANSLOCATION | BND | chr3 | 185329240 | chr3 | 185329125 | MAP3K13 | GENE | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 416,2 | 616,1 | MantaBND:1:45143:45143:2:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:45143:45143:4:1:0:1 | TRANSLOCATION | BND | chr3 | 185329323 | chr3 | 185329141 | MAP3K13 | GENE | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 509,1 | 323,2 | MantaBND:1:45143:45143:4:1:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:41330:41330:3:0:0:1 | TRANSLOCATION | BND | chr4 | 112647023 | chr4 | 112647185 | LARP7&MIR302CHG | INTRON:5 | + | LARP7 | INTRON:5 | - | . | MinSomaticScore | 0 | no | . | 273,3 | 614,11 | MantaBND:1:41330:41330:3:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:41330:41330:3:0:0:0 | TRANSLOCATION | BND | chr4 | 112647179 | chr4 | 112647029 | LARP7&MIR302CHG | INTRON:6 | + | LARP7 | INTRON:6 | - | . | MinSomaticScore | 0 | no | . | 273,3 | 614,11 | MantaBND:1:41330:41330:3:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaDEL:1:41996:41996:4:0:0 | DELETION | DEL | chr4 | 186726507 | chr4 | 186726673 | FAT1 | INTERGENIC | . | INTERGENIC | INTERGENIC | . | . | PASS | -166 | no | . | 837,0 | 2229,82 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:7291:0:0:0:0:0:0 | TRANSLOCATION | BND | chr5 | 55785177 | chr5 | 55785308 | DDX4 | INTRON:10 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 91,2 | 202,2 | MantaBND:7291:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:7291:0:0:0:0:0:1 | TRANSLOCATION | BND | chr5 | 55785301 | chr5 | 55785184 | DDX4 | EXON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 91,2 | 202,2 | MantaBND:7291:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:7604:0:0:0:0:0:0 | TRANSLOCATION | BND | chr5 | 112792342 | chr5 | 112792473 | APC | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 267,2 | 636,3 | MantaBND:7604:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:7604:0:0:0:0:0:1 | TRANSLOCATION | BND | chr5 | 112792467 | chr5 | 112792348 | APC | EXON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 267,2 | 636,3 | MantaBND:7604:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:38986:38986:4:2:0:0 | TRANSLOCATION | BND | chr5 | 132579294 | chr5 | 132579432 | ENSG00000283782&RAD50 | INTRON:3 | + | RAD50 | INTRON:3 | - | . | MinSomaticScore | 0 | no | . | 290,2 | 677,2 | MantaBND:1:38986:38986:4:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:38986:38986:4:2:0:1 | TRANSLOCATION | BND | chr5 | 132579424 | chr5 | 132579302 | ENSG00000283782&RAD50 | EXON:4 | + | RAD50 | EXON:4 | - | . | MinSomaticScore | 0 | no | . | 290,2 | 677,2 | MantaBND:1:38986:38986:4:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:37557:37557:2:0:0:0 | TRANSLOCATION | BND | chr6 | 152011775 | chr6 | 152011903 | ESR1 | EXON:5 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 1055,2 | 2030,2 | MantaBND:1:37557:37557:2:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:37557:37557:2:0:0:1 | TRANSLOCATION | BND | chr6 | 152011898 | chr6 | 152011780 | ESR1 | INTRON:5 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 1055,2 | 2030,2 | MantaBND:1:37557:37557:2:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:31440:31440:6:0:0:0 | TRANSLOCATION | BND | chr7 | 20158838 | chr7 | 20158985 | MACC1 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 190,2 | 532,4 | MantaBND:1:31440:31440:6:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:31440:31440:6:0:0:1 | TRANSLOCATION | BND | chr7 | 20158979 | chr7 | 20158844 | MACC1 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 190,2 | 532,4 | MantaBND:1:31440:31440:6:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:5938:0:0:0:0:0:1 | TRANSLOCATION | BND | chr7 | 91994722 | chr7 | 91994835 | AKAP9 | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 103,2 | 254,3 | MantaBND:5938:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:5938:0:0:0:0:0:0 | TRANSLOCATION | BND | chr7 | 91994826 | chr7 | 91994731 | AKAP9 | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 103,2 | 254,3 | MantaBND:5938:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:33119:33119:2:0:0:0 | TRANSLOCATION | BND | chr7 | 124842883 | chr7 | 124843023 | POT1 | EXON:13 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 271,2 | 637,3 | MantaBND:1:33119:33119:2:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:33119:33119:2:0:0:1 | TRANSLOCATION | BND | chr7 | 124843017 | chr7 | 124842889 | POT1 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 271,2 | 637,3 | MantaBND:1:33119:33119:2:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaDEL:12982:0:1:0:1:0 | DELETION | DEL | chr8 | 11758538 | chr8 | 11758841 | GATA4 | EXON:7 | . | INTERGENIC | INTERGENIC | . | . | PASS | -303 | no | . | 753,16 | 1881,55 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13132:0:0:1:0:0:0 | TRANSLOCATION | BND | chr8 | 42369751 | chr8 | 42369865 | POLB | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 27,2 | 77,3 | MantaBND:13132:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13132:0:0:1:0:0:1 | TRANSLOCATION | BND | chr8 | 42369857 | chr8 | 42369759 | POLB | EXON:13 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 27,2 | 77,3 | MantaBND:13132:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13212:0:0:0:0:0:0 | TRANSLOCATION | BND | chr8 | 68053072 | chr8 | 68053185 | PREX2 | INTRON:8 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 270,2 | 619,5 | MantaBND:13212:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13212:0:0:0:0:0:1 | TRANSLOCATION | BND | chr8 | 68053179 | chr8 | 68053078 | PREX2 | EXON:9 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 270,2 | 619,5 | MantaBND:13212:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13298:0:0:3:0:0:0 | TRANSLOCATION | BND | chr8 | 92075863 | chr8 | 92075994 | RUNX1T1 | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 135,2 | 370,4 | MantaBND:13298:0:0:3:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:13298:0:0:3:0:0:1 | TRANSLOCATION | BND | chr8 | 92075986 | chr8 | 92075871 | RUNX1T1 | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 135,2 | 370,4 | MantaBND:13298:0:0:3:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:55374:55374:26:0:0:0 | TRANSLOCATION | BND | chr9 | 5564764 | chr9 | 5564887 | ENSG00000286162&PDCD1LG2 | INTRON:6 | + | PDCD1LG2 | INTRON:6 | - | . | MinSomaticScore | 0 | no | . | 594,2 | 1284,4 | MantaBND:1:55374:55374:26:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:55374:55374:26:0:0:1 | TRANSLOCATION | BND | chr9 | 5564881 | chr9 | 5564770 | ENSG00000286162&PDCD1LG2 | INTRON:6 | + | PDCD1LG2 | INTRON:6 | - | . | MinSomaticScore | 0 | no | . | 594,2 | 1284,4 | MantaBND:1:55374:55374:26:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:12640:0:0:0:0:0:1 | TRANSLOCATION | BND | chr9 | 83679895 | chr9 | 83679982 | UBQLN1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 173,1 | 417,8 | MantaBND:12640:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:12640:0:0:0:0:0:0 | TRANSLOCATION | BND | chr9 | 83679974 | chr9 | 83679903 | UBQLN1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 173,1 | 417,8 | MantaBND:12640:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:12654:0:0:0:0:0:1 | TRANSLOCATION | BND | chr9 | 84724387 | chr9 | 84724529 | NTRK2 | INTRON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 328,2 | 659,3 | MantaBND:12654:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:12654:0:0:0:0:0:0 | TRANSLOCATION | BND | chr9 | 84724525 | chr9 | 84724391 | NTRK2 | INTRON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 328,2 | 659,3 | MantaBND:12654:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2705:0:0:5:3:0:1 | TRANSLOCATION | BND | chr10 | 110600723 | chr10 | 110600847 | SMC3 | INTRON:22 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 278,2 | 638,6 | MantaBND:2705:0:0:5:3:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2705:0:0:5:3:0:0 | TRANSLOCATION | BND | chr10 | 110600837 | chr10 | 110600733 | SMC3 | INTRON:22 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 278,2 | 638,6 | MantaBND:2705:0:0:5:3:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:9158:9158:6:2:0:0 | TRANSLOCATION | BND | chr11 | 108244562 | chr11 | 108244832 | ATM | INTRON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 217,1 | 454,8 | MantaBND:1:9158:9158:6:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:9158:9158:6:2:0:1 | TRANSLOCATION | BND | chr11 | 108244826 | chr11 | 108244568 | ATM | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 217,1 | 454,8 | MantaBND:1:9158:9158:6:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:3876:3876:1:0:0:1 | TRANSLOCATION | BND | chr12 | 10908847 | chr12 | 10908988 | ENSG00000275778&PRH1 | INTRON:3 | + | ENSG00000275778 | INTRON:3 | - | . | MinSomaticScore | 0 | no | . | 164,1 | 405,8 | MantaBND:1:3876:3876:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:3876:3876:1:0:0:0 | TRANSLOCATION | BND | chr12 | 10908984 | chr12 | 10908851 | ENSG00000275778&PRH1 | INTRON:3 | + | ENSG00000275778 | INTRON:3 | - | . | MinSomaticScore | 0 | no | . | 164,1 | 405,8 | MantaBND:1:3876:3876:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:4331:4331:28:0:0:0 | TRANSLOCATION | BND | chr12 | 31984882 | chr12 | 31985026 | RESF1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 383,2 | 841,4 | MantaBND:1:4331:4331:28:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:4331:4331:28:0:0:1 | TRANSLOCATION | BND | chr12 | 31985020 | chr12 | 31984888 | RESF1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 383,2 | 841,4 | MantaBND:1:4331:4331:28:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaDEL:1:5243:5243:9:0:0 | DELETION | DEL | chr12 | 57630224 | chr12 | 57630555 | B4GALNT1 | INTRON:5 | . | ENSG00000287908 | INTERGENIC | . | . | MinSomaticScore | -331 | no | . | 784,20 | 1518,14 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:5451:5451:42:5:0:0 | TRANSLOCATION | BND | chr12 | 68843299 | chr12 | 68843717 | CPM&MDM2 | GENE | + | CPM | GENE | - | . | PASS | 0 | no | . | 347,0 | 425,14 | MantaBND:1:5451:5451:42:5:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:5451:5451:42:5:0:1 | TRANSLOCATION | BND | chr12 | 68843698 | chr12 | 68843318 | CPM&MDM2 | GENE | + | CPM | GENE | - | . | PASS | 0 | no | . | 347,0 | 425,14 | MantaBND:1:5451:5451:42:5:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1309:0:1:0:0:0:1 | TRANSLOCATION | BND | chr12 | 78190158 | chr12 | 78190305 | NAV3 | EXON:34 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 71,0 | 167,6 | MantaBND:1309:0:1:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1309:0:1:0:0:0:0 | TRANSLOCATION | BND | chr12 | 78190299 | chr12 | 78190164 | NAV3 | INTRON:34 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 71,0 | 167,6 | MantaBND:1309:0:1:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:16712:16712:29:0:0:1 | TRANSLOCATION | BND | chr16 | 13950253 | chr16 | 13950390 | ERCC4 | EXON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 735,3 | 1814,4 | MantaBND:1:16712:16712:29:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:16712:16712:29:0:0:0 | TRANSLOCATION | BND | chr16 | 13950386 | chr16 | 13950257 | ERCC4 | EXON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 735,3 | 1814,4 | MantaBND:1:16712:16712:29:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2973:2:4:0:0:0:0 | TRANSLOCATION | BND | chr17 | 16028725 | chr17 | 16030912 | NCOR1&TTC19 | EXON:10 | + | TTC19 | EXON:10 | - | . | MinSomaticScore | 0 | no | . | 195,3 | 412,2 | MantaBND:2973:2:4:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2973:2:4:0:0:0:1 | TRANSLOCATION | BND | chr17 | 16030907 | chr17 | 16028730 | NCOR1&TTC19 | EXON:46 | + | TTC19 | GENE | - | . | MinSomaticScore | 0 | no | . | 195,3 | 412,2 | MantaBND:2973:2:4:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2980:0:0:0:0:0:1 | TRANSLOCATION | BND | chr17 | 16064202 | chr17 | 16064329 | NCOR1 | INTRON:34 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 361,2 | 950,3 | MantaBND:2980:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:2980:0:0:0:0:0:0 | TRANSLOCATION | BND | chr17 | 16064324 | chr17 | 16064207 | NCOR1 | INTRON:34 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 361,2 | 950,3 | MantaBND:2980:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:29676:29676:0:0:0:1 | TRANSLOCATION | BND | chr20 | 37996957 | chr20 | 37997156 | TTI1 | INTRON:5 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 244,2 | 445,2 | MantaBND:1:29676:29676:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:29676:29676:0:0:0:0 | TRANSLOCATION | BND | chr20 | 37997152 | chr20 | 37996961 | TTI1 | INTRON:5 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 244,2 | 445,2 | MantaBND:1:29676:29676:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:27540:27540:3:0:0:0 | TRANSLOCATION | BND | chr22 | 16783943 | chr22 | 16784024 | XKR3 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 326,0 | 700,7 | MantaBND:1:27540:27540:3:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:27540:27540:3:0:0:1 | TRANSLOCATION | BND | chr22 | 16784018 | chr22 | 16783949 | XKR3 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 326,0 | 700,7 | MantaBND:1:27540:27540:3:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaDEL:1:27980:27980:35:0:0 | DELETION | DEL | chr22 | 23280973 | chr22 | 23281098 | BCR | INTRON:8 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -125 | no | . | 606,0 | 1963,8 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:191:191:0:0:0:0 | TRANSLOCATION | BND | chrX | 10469412 | chrX | 10469693 | MID1 | INTRON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 441,2 | 651,3 | MantaBND:1:191:191:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:191:191:0:0:0:1 | TRANSLOCATION | BND | chrX | 10469686 | chrX | 10469419 | MID1 | INTRON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 441,2 | 651,3 | MantaBND:1:191:191:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:442:442:0:0:0:1 | TRANSLOCATION | BND | chrX | 20130459 | chrX | 20130583 | EIF1AX | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 276,3 | 702,4 | MantaBND:1:442:442:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:1:442:442:0:0:0:0 | TRANSLOCATION | BND | chrX | 20130578 | chrX | 20130464 | EIF1AX | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 276,3 | 702,4 | MantaBND:1:442:442:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:48:0:0:0:0:0:1 | TRANSLOCATION | BND | chrX | 21649007 | chrX | 21649131 | CNKSR2 | EXON:21 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 114,2 | 243,3 | MantaBND:48:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:48:0:0:0:0:0:0 | TRANSLOCATION | BND | chrX | 21649126 | chrX | 21649012 | CNKSR2 | INTRON:21 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 114,2 | 243,3 | MantaBND:48:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:464:0:0:1:0:0:0 | TRANSLOCATION | BND | chrX | 147925604 | chrX | 147925921 | FMR1 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 133,2 | 272,3 | MantaBND:464:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2 | MantaBND:464:0:0:1:0:0:1 | TRANSLOCATION | BND | chrX | 147925915 | chrX | 147925610 | FMR1 | INTRON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 133,2 | 272,3 | MantaBND:464:0:0:1:0:0:0 |
82 rows