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- 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.sv.hmnz.tsv
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- s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_dna/hmnz_cgp_dna_exp0035__70824045--20260606-022813/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/variants/dna_fusions/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.sv.hmnz.tsv
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- hmnz-cgp-dna-exp0035-20260606-022813
- Published
- Jun 05, 2026 7:30 PM
Content
View in new tab| sample | sv_id | sv_type | svtype_standard | chr1 | pos1 | chr2 | pos2 | gene1 | region1 | strand1 | gene2 | region2 | strand2 | qual | filter | svlen | imprecise | tumor_gt | tumor_pr | tumor_sr | mate_id |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:23055:0:0:0:2:0 | DELETION | DEL | chr1 | 1310824 | chr1 | 1310893 | PUSL1 | INTRON:7 | . | ACAP3 | INTERGENIC | . | . | PASS | -69 | no | . | 190,0 | 632,40 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:30137:30140:0:1:0:0 | TRANSLOCATION | BND | chr1 | 109926601 | chr6 | 134261778 | CSF1&SGK1 | INTRON:8 | - | INTERGENIC | INTERGENIC | + | . | PASS | 0 | no | . | 666,0 | 1936,16 | MantaBND:0:30137:30140:0:1:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:43579:43579:34:0:0 | DELETION | DEL | chr1 | 156866439 | chr1 | 156866547 | NTRK1 | INTRON:3 | . | INTERGENIC | INTERGENIC | . | . | PASS | -108 | no | . | 547,0 | 2117,30 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:25689:0:0:1:0:0:1 | TRANSLOCATION | BND | chr1 | 220025022 | chr1 | 220025152 | EPRS1 | INTRON:7 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 76,1 | 235,8 | MantaBND:25689:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:25689:0:0:1:0:0:0 | TRANSLOCATION | BND | chr1 | 220025148 | chr1 | 220025026 | EPRS1 | EXON:7 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 76,1 | 235,8 | MantaBND:25689:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38116:38116:1:0:0:1 | TRANSLOCATION | BND | chr2 | 55026853 | chr2 | 55026981 | RTN4 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 222,2 | 585,5 | MantaBND:0:38116:38116:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38116:38116:1:0:0:0 | TRANSLOCATION | BND | chr2 | 55026975 | chr2 | 55026859 | RTN4 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 222,2 | 585,5 | MantaBND:0:38116:38116:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38159:38159:8:0:0:0 | TRANSLOCATION | BND | chr2 | 60931098 | chr2 | 60931258 | REL | EXON:11 | + | ENSG00000267520&REL | EXON:11 | - | . | MinSomaticScore | 0 | no | . | 277,2 | 984,4 | MantaBND:0:38159:38159:8:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38159:38159:8:0:0:1 | TRANSLOCATION | BND | chr2 | 60931253 | chr2 | 60931103 | REL | EXON:11 | + | ENSG00000267520&REL | EXON:11 | - | . | MinSomaticScore | 0 | no | . | 277,2 | 984,4 | MantaBND:0:38159:38159:8:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDUP:TANDEM:21637:0:0:3:0:0 | DUPLICATION | DUP | chr2 | 112756070 | chr2 | 112756393 | CKAP2L | EXON:4 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 323 | no | . | 290,2 | 878,4 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:38876:38876:1:1:0 | DELETION | DEL | chr2 | 113217910 | chr2 | 113218025 | PAX8 | EXON:12 | . | PAX8-AS1 | GENE | . | . | MinSomaticScore | -115 | no | . | 554,0 | 2149,15 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38940:38940:31:0:0:1 | TRANSLOCATION | BND | chr2 | 140233022 | chr2 | 140233100 | LRP1B | EXON:91 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 242,0 | 618,10 | MantaBND:0:38940:38940:31:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:38940:38940:31:0:0:0 | TRANSLOCATION | BND | chr2 | 140233092 | chr2 | 140233030 | LRP1B | EXON:91 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 242,0 | 618,10 | MantaBND:0:38940:38940:31:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:22451:0:0:0:0:0:1 | TRANSLOCATION | BND | chr2 | 189867689 | chr2 | 189867858 | PMS1 | INTRON:10 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 181,2 | 517,3 | MantaBND:22451:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:22451:0:0:0:0:0:0 | TRANSLOCATION | BND | chr2 | 189867852 | chr2 | 189867695 | PMS1 | EXON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 181,2 | 517,3 | MantaBND:22451:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:18714:0:0:0:0:0:0 | TRANSLOCATION | BND | chr3 | 37523497 | chr3 | 37523604 | ITGA9 | INTRON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 55,2 | 220,4 | MantaBND:18714:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:18714:0:0:0:0:0:1 | TRANSLOCATION | BND | chr3 | 37523596 | chr3 | 37523505 | ITGA9 | EXON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 55,2 | 220,4 | MantaBND:18714:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:19348:0:0:0:0:0:0 | TRANSLOCATION | BND | chr3 | 101347877 | chr3 | 101348092 | SENP7 | EXON:13 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 170,2 | 342,4 | MantaBND:19348:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:19348:0:0:0:0:0:1 | TRANSLOCATION | BND | chr3 | 101348089 | chr3 | 101347880 | SENP7 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 170,2 | 342,4 | MantaBND:19348:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:19650:1:1:4:0:0:0 | TRANSLOCATION | BND | chr3 | 125233464 | chr3 | 125233691 | ZNF148 | EXON:9 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 307,2 | 783,3 | MantaBND:19650:1:1:4:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:19650:1:1:4:0:0:1 | TRANSLOCATION | BND | chr3 | 125233687 | chr3 | 125233468 | ZNF148 | EXON:9 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 307,2 | 783,3 | MantaBND:19650:1:1:4:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:20020:0:0:0:0:0:1 | TRANSLOCATION | BND | chr3 | 150581746 | chr3 | 150581878 | EIF2A&SERP1 | EXON:12 | + | EIF2A | EXON:12 | - | . | MinSomaticScore | 0 | no | . | 149,2 | 361,2 | MantaBND:20020:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:20020:0:0:0:0:0:0 | TRANSLOCATION | BND | chr3 | 150581872 | chr3 | 150581752 | EIF2A&SERP1 | INTRON:12 | + | EIF2A | INTRON:12 | - | . | MinSomaticScore | 0 | no | . | 149,2 | 361,2 | MantaBND:20020:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:20345:0:0:0:0:0:1 | TRANSLOCATION | BND | chr3 | 184832659 | chr3 | 184832733 | VPS8 | INTRON:3 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 81,0 | 228,6 | MantaBND:20345:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:20345:0:0:0:0:0:0 | TRANSLOCATION | BND | chr3 | 184832727 | chr3 | 184832665 | VPS8 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 81,0 | 228,6 | MantaBND:20345:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:20418:0:1:0:0:0 | DELETION | DEL | chr3 | 186997030 | chr3 | 186997177 | ST6GAL1 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | -147 | no | . | 840,0 | 2631,14 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:16894:0:0:0:0:0:1 | TRANSLOCATION | BND | chr4 | 6861520 | chr4 | 6861718 | KIAA0232 | EXON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 406,2 | 980,4 | MantaBND:16894:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:16894:0:0:0:0:0:0 | TRANSLOCATION | BND | chr4 | 6861711 | chr4 | 6861527 | KIAA0232 | EXON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 406,2 | 980,4 | MantaBND:16894:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:15132:15132:10:3:0:1 | TRANSLOCATION | BND | chr4 | 185458828 | chr4 | 185458993 | CCDC110 | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 188,2 | 531,4 | MantaBND:0:15132:15132:10:3:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:15132:15132:10:3:0:0 | TRANSLOCATION | BND | chr4 | 185458986 | chr4 | 185458835 | CCDC110 | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 188,2 | 531,4 | MantaBND:0:15132:15132:10:3:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:15738:0:0:1:0:0:0 | TRANSLOCATION | BND | chr5 | 64788902 | chr5 | 64789010 | CWC27 | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 101,1 | 250,4 | MantaBND:15738:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:15738:0:0:1:0:0:1 | TRANSLOCATION | BND | chr5 | 64789005 | chr5 | 64788907 | CWC27 | EXON:7 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 101,1 | 250,4 | MantaBND:15738:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:16247:0:0:0:0:0:1 | TRANSLOCATION | BND | chr5 | 115806463 | chr5 | 115806589 | CDO1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 57,2 | 244,3 | MantaBND:16247:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:16247:0:0:0:0:0:0 | TRANSLOCATION | BND | chr5 | 115806582 | chr5 | 115806470 | CDO1 | INTRON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 57,2 | 244,3 | MantaBND:16247:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:31653:31653:13:0:0:1 | TRANSLOCATION | BND | chr5 | 132579833 | chr5 | 132579933 | ENSG00000283782&RAD50 | INTRON:4 | + | RAD50 | INTRON:4 | - | . | PASS | 0 | no | . | 217,2 | 620,6 | MantaBND:0:31653:31653:13:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:31653:31653:13:0:0:0 | TRANSLOCATION | BND | chr5 | 132579926 | chr5 | 132579840 | ENSG00000283782&RAD50 | EXON:5 | + | RAD50 | EXON:5 | - | . | PASS | 0 | no | . | 217,2 | 620,6 | MantaBND:0:31653:31653:13:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:14317:0:0:1:4:0:0 | TRANSLOCATION | BND | chr6 | 70526756 | chr6 | 70527023 | FAM135A | INTRON:13 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 39,2 | 78,2 | MantaBND:14317:0:0:1:4:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:14317:0:0:1:4:0:1 | TRANSLOCATION | BND | chr6 | 70527018 | chr6 | 70526761 | FAM135A | INTRON:13 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 39,2 | 78,2 | MantaBND:14317:0:0:1:4:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDUP:TANDEM:0:29512:29512:10:1:0 | DUPLICATION | DUP | chr6 | 87258798 | chr6 | 87259176 | ZNF292 | EXON:8 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 378 | no | . | 273,2 | 771,4 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29510:29510:6:2:0:1 | TRANSLOCATION | BND | chr6 | 87259774 | chr6 | 87259867 | ZNF292 | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 302,2 | 881,5 | MantaBND:0:29510:29510:6:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29510:29510:6:2:0:0 | TRANSLOCATION | BND | chr6 | 87259862 | chr6 | 87259779 | ZNF292 | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 302,2 | 881,5 | MantaBND:0:29510:29510:6:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29815:29815:2:0:0:1 | TRANSLOCATION | BND | chr6 | 117322260 | chr6 | 117322431 | ROS1 | INTRON:34 | + | ENSG00000282218&ROS1 | INTRON:34 | - | . | PASS | 0 | no | . | 298,2 | 811,3 | MantaBND:0:29815:29815:2:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29815:29815:11:0:0:0 | TRANSLOCATION | BND | chr6 | 117322272 | chr6 | 117322425 | ROS1 | INTRON:34 | + | ENSG00000282218&ROS1 | INTRON:34 | - | . | PASS | 0 | yes | . | 314,3 | . | MantaBND:0:29815:29815:11:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29815:29815:11:0:0:1 | TRANSLOCATION | BND | chr6 | 117322425 | chr6 | 117322272 | ROS1 | INTRON:34 | + | ENSG00000282218&ROS1 | INTRON:34 | - | . | PASS | 0 | yes | . | 314,3 | . | MantaBND:0:29815:29815:11:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:29815:29815:2:0:0:0 | TRANSLOCATION | BND | chr6 | 117322425 | chr6 | 117322266 | ROS1 | INTRON:34 | + | ENSG00000282218&ROS1 | INTRON:34 | - | . | PASS | 0 | no | . | 298,2 | 811,3 | MantaBND:0:29815:29815:2:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:30137:30140:0:1:0:1 | TRANSLOCATION | BND | chr6 | 134261778 | chr1 | 109926601 | CSF1&SGK1 | INTRON:2 | - | INTERGENIC | INTERGENIC | + | . | PASS | 0 | no | . | 666,0 | 1936,16 | MantaBND:0:30137:30140:0:1:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaINS:0:30182:30182:1:10:0 | INSERTION | INS | chr6 | 137218588 | chr6 | 137218589 | IFNGR1 | INTRON | . | INTERGENIC | INTERGENIC | . | . | PASS | 0 | no | . | 8,0 | 517,263 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:12294:0:0:0:0:0 | DELETION | DEL | chr7 | 2583767 | chr7 | 2583908 | IQCE | INTRON:10 | . | INTERGENIC | INTERGENIC | . | . | PASS | -141 | no | . | 146,0 | 313,154 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:12591:0:0:1:0:0:0 | TRANSLOCATION | BND | chr7 | 40316781 | chr7 | 40316869 | SUGCT | EXON:9 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 99,2 | 266,4 | MantaBND:12591:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:12591:0:0:1:0:0:1 | TRANSLOCATION | BND | chr7 | 40316865 | chr7 | 40316785 | SUGCT | INTRON:9 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 99,2 | 266,4 | MantaBND:12591:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:25650:25650:3:2:0:0 | TRANSLOCATION | BND | chr7 | 64544348 | chr7 | 64544479 | ZNF680 | EXON:2 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 244,2 | 663,6 | MantaBND:0:25650:25650:3:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:25650:25650:3:2:0:1 | TRANSLOCATION | BND | chr7 | 64544472 | chr7 | 64544355 | ZNF680 | INTRON:1 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 244,2 | 663,6 | MantaBND:0:25650:25650:3:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDUP:TANDEM:0:25840:25840:10:4:0 | DUPLICATION | DUP | chr7 | 81750879 | chr7 | 81751180 | HGF | INTRON:5 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 301 | no | . | 267,2 | 676,4 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:12861:0:0:0:0:0:0 | TRANSLOCATION | BND | chr7 | 91994722 | chr7 | 91994835 | AKAP9 | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 79,2 | 295,4 | MantaBND:12861:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:12861:0:0:0:0:0:1 | TRANSLOCATION | BND | chr7 | 91994826 | chr7 | 91994731 | AKAP9 | INTRON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 79,2 | 295,4 | MantaBND:12861:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:49133:49133:2:1:0:0 | TRANSLOCATION | BND | chr8 | 89943260 | chr8 | 89943359 | NBN | EXON:14 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 247,2 | 891,4 | MantaBND:0:49133:49133:2:1:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:49133:49133:2:1:0:1 | TRANSLOCATION | BND | chr8 | 89943354 | chr8 | 89943265 | NBN | EXON:14 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 247,2 | 891,4 | MantaBND:0:49133:49133:2:1:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:49358:49358:4:1:0 | DELETION | DEL | chr8 | 108785003 | chr8 | 108785057 | TMEM74 | EXON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -54 | no | . | 162,0 | 691,15 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:49428:49428:12:0:0 | DELETION | DEL | chr8 | 116874143 | chr8 | 116874414 | RAD21-AS1 | INTERGENIC | . | MIR3610 | INTERGENIC | . | . | PASS | -271 | no | . | 989,9 | 2443,21 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:45216:45216:14:1:0:1 | TRANSLOCATION | BND | chr9 | 2192261 | chr9 | 2192707 | SMARCA2 | INTRON:33 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 479,3 | 1336,6 | MantaBND:0:45216:45216:14:1:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:45216:45216:14:1:0:0 | TRANSLOCATION | BND | chr9 | 2192702 | chr9 | 2192266 | SMARCA2 | INTRON:33 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 479,3 | 1336,6 | MantaBND:0:45216:45216:14:1:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDUP:TANDEM:0:45216:45216:38:2:0 | DUPLICATION | DUP | chr9 | 2193474 | chr9 | 2193630 | SMARCA2 | EXON:34 | . | SMARCA2-RN7SL592P | INTERGENIC | . | . | PASS | 156 | no | . | 503,4 | 1461,8 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaINS:0:45885:45885:1:0:0 | INSERTION | INS | chr9 | 35906592 | chr9 | 35906592 | HRCT1 | EXON:1 | . | SPAAR | INTERGENIC | . | . | PASS | 123 | no | . | 4,0 | 626,138 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:26929:0:1:0:0:0 | DELETION | DEL | chr9 | 122724776 | chr9 | 122750801 | OR1L6 | EXON:1 | . | OR1L4 | EXON:1 | . | . | PASS | -26025 | yes | . | 398,23 | . | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:4618:0:0:1:0:0:1 | TRANSLOCATION | BND | chr10 | 8040222 | chr10 | 8040433 | INTERGENIC | INTERGENIC | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 128,2 | 556,2 | MantaBND:4618:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:4618:0:0:1:0:0:0 | TRANSLOCATION | BND | chr10 | 8040428 | chr10 | 8040227 | INTERGENIC | INTERGENIC | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 128,2 | 556,2 | MantaBND:4618:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:5584:10:10:3:0:0 | DELETION | DEL | chr10 | 110605337 | chr10 | 110606262 | SMC3 | EXON:29 | . | SMC3-Y_RNA | INTERGENIC | . | . | MinSomaticScore | -925 | no | . | 129,2 | 363,2 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:6791:6791:0:0:0:0 | TRANSLOCATION | BND | chr11 | 62801288 | chr11 | 62801362 | NXF1 | INTRON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 318,1 | 837,8 | MantaBND:0:6791:6791:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:6791:6791:0:0:0:1 | TRANSLOCATION | BND | chr11 | 62801356 | chr11 | 62801294 | NXF1 | EXON:8 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 318,1 | 837,8 | MantaBND:0:6791:6791:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:7513:7513:10:1:0 | DELETION | DEL | chr11 | 101129006 | chr11 | 101129221 | PGR&PGR-AS1 | GENE | . | PGR | EXON:1 | . | . | PASS | -215 | no | . | 659,0 | 2129,16 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7595:7595:33:0:0:1 | TRANSLOCATION | BND | chr11 | 108225326 | chr11 | 108226562 | ATM | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 651,1 | 1435,4 | MantaBND:0:7595:7595:33:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7595:7595:35:0:0:1 | TRANSLOCATION | BND | chr11 | 108225489 | chr11 | 108226072 | ATM | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 417,1 | 1171,2 | MantaBND:0:7595:7595:35:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7595:7595:35:0:0:0 | TRANSLOCATION | BND | chr11 | 108226070 | chr11 | 108225491 | ATM | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 417,1 | 1171,2 | MantaBND:0:7595:7595:35:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7595:7595:33:0:0:0 | TRANSLOCATION | BND | chr11 | 108226554 | chr11 | 108225334 | ATM | INTRON:2 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 651,1 | 1435,4 | MantaBND:0:7595:7595:33:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7682:7682:6:0:0:0 | TRANSLOCATION | BND | chr11 | 108326253 | chr11 | 108326358 | ATM&C11orf65 | INTRON:48 | + | ATM | INTRON:48 | - | . | MinSomaticScore | 0 | no | . | 203,2 | 536,4 | MantaBND:0:7682:7682:6:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:7682:7682:6:0:0:1 | TRANSLOCATION | BND | chr11 | 108326351 | chr11 | 108326260 | ATM&C11orf65 | INTRON:48 | + | ATM | INTRON:48 | - | . | MinSomaticScore | 0 | no | . | 203,2 | 536,4 | MantaBND:0:7682:7682:6:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:1774:0:0:1:0:0:0 | TRANSLOCATION | BND | chr12 | 15902824 | chr12 | 15902924 | STRAP | INTRON:10 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 70,2 | 61,6 | MantaBND:1774:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:1774:0:0:1:0:0:1 | TRANSLOCATION | BND | chr12 | 15902921 | chr12 | 15902827 | STRAP | EXON:11 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 70,2 | 61,6 | MantaBND:1774:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:2692:0:0:1:0:0:0 | TRANSLOCATION | BND | chr12 | 89634809 | chr12 | 89634917 | ATP2B1 | EXON:4 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 97,2 | 341,4 | MantaBND:2692:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:2692:0:0:1:0:0:1 | TRANSLOCATION | BND | chr12 | 89634910 | chr12 | 89634816 | ATP2B1 | INTRON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 97,2 | 341,4 | MantaBND:2692:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:8101:0:0:0:0:0 | DELETION | DEL | chr15 | 41570155 | chr15 | 41570238 | TYRO3 | INTRON:11 | . | INTERGENIC | INTERGENIC | . | . | PASS | -83 | no | . | 163,0 | 683,131 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:8101:0:0:0:0:1 | DELETION | DEL | chr15 | 41570340 | chr15 | 41570603 | TYRO3 | INTRON:11 | . | INTERGENIC | INTERGENIC | . | . | PASS | -263 | no | . | 276,2 | 760,158 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:15247:15247:0:0:0 | DELETION | DEL | chr15 | 41572564 | chr15 | 41573001 | TYRO3 | INTRON:15 | . | INTERGENIC | INTERGENIC | . | . | PASS | -437 | no | . | 199,7 | 547,139 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:15247:15247:0:0:1 | DELETION | DEL | chr15 | 41573111 | chr15 | 41573307 | TYRO3 | INTRON:17 | . | INTERGENIC | INTERGENIC | . | . | PASS | -196 | no | . | 282,0 | 873,89 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:15247:15247:0:0:2 | DELETION | DEL | chr15 | 41573466 | chr15 | 41573677 | TYRO3 | INTRON:17 | . | INTERGENIC | INTERGENIC | . | . | PASS | -211 | no | . | 288,0 | 725,78 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:15253:15254:0:0:0 | DELETION | DEL | chr15 | 41573815 | chr15 | 41577885 | TYRO3 | INTRON:18 | . | INTERGENIC | INTERGENIC | . | . | PASS | -4070 | no | . | 241,19 | 781,187 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDUP:TANDEM:8161:0:1:0:0:0 | DUPLICATION | DUP | chr15 | 43037829 | chr15 | 43038267 | UBR1 | INTRON:17 | . | INTERGENIC | INTERGENIC | . | . | MinSomaticScore | 438 | no | . | 226,2 | 628,4 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:15516:15516:12:0:0:0 | TRANSLOCATION | BND | chr15 | 49485218 | chr15 | 49485311 | FAM227B&FGF7 | EXON:4 | + | FGF7 | EXON:4 | - | . | PASS | 0 | no | . | 216,0 | 854,9 | MantaBND:0:15516:15516:12:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:15516:15516:12:0:0:1 | TRANSLOCATION | BND | chr15 | 49485307 | chr15 | 49485222 | FAM227B&FGF7 | EXON:4 | + | FGF7 | EXON:4 | - | . | PASS | 0 | no | . | 216,0 | 854,9 | MantaBND:0:15516:15516:12:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:8353:0:0:0:2:0:0 | TRANSLOCATION | BND | chr15 | 52410335 | chr15 | 52410428 | MYO5A | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 169,2 | 457,2 | MantaBND:8353:0:0:0:2:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:8353:0:0:0:2:0:1 | TRANSLOCATION | BND | chr15 | 52410424 | chr15 | 52410339 | MYO5A | EXON:6 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 169,2 | 457,2 | MantaBND:8353:0:0:0:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:14806:14806:3:0:0 | DELETION | DEL | chr16 | 89299371 | chr16 | 89299436 | ENSG00000260279 | INTERGENIC | . | ANKRD11 | INTRON:4 | . | . | PASS | -65 | no | . | 437,0 | 2694,183 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:10452:10452:9:0:0:1 | TRANSLOCATION | BND | chr17 | 16030761 | chr17 | 16030874 | NCOR1&TTC19 | GENE | + | TTC19 | GENE | - | . | PASS | 0 | no | . | 256,0 | 804,9 | MantaBND:0:10452:10452:9:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:10452:10452:9:0:0:0 | TRANSLOCATION | BND | chr17 | 16030866 | chr17 | 16030769 | NCOR1&TTC19 | GENE | + | TTC19 | GENE | - | . | PASS | 0 | no | . | 256,0 | 804,9 | MantaBND:0:10452:10452:9:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6516:0:0:0:0:0:0 | TRANSLOCATION | BND | chr17 | 43039386 | chr17 | 43039559 | INTERGENIC | INTERGENIC | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 256,1 | 726,8 | MantaBND:6516:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6516:0:0:0:0:0:1 | TRANSLOCATION | BND | chr17 | 43039553 | chr17 | 43039392 | INTERGENIC | INTERGENIC | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 256,1 | 726,8 | MantaBND:6516:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6691:0:0:2:0:0:1 | TRANSLOCATION | BND | chr17 | 55047175 | chr17 | 55047362 | STXBP4 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 156,2 | . | MantaBND:6691:0:0:2:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6691:0:0:2:0:0:0 | TRANSLOCATION | BND | chr17 | 55047362 | chr17 | 55047175 | STXBP4 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | yes | . | 156,2 | . | MantaBND:6691:0:0:2:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6691:0:0:1:0:0:1 | TRANSLOCATION | BND | chr17 | 55047365 | chr17 | 55047454 | STXBP4 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 19,1 | 54,1 | MantaBND:6691:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6691:0:0:1:0:0:0 | TRANSLOCATION | BND | chr17 | 55047445 | chr17 | 55047374 | STXBP4 | INTRON:12 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 19,1 | 54,1 | MantaBND:6691:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6918:0:0:0:0:0:1 | TRANSLOCATION | BND | chr17 | 67743525 | chr17 | 67743647 | NOL11 | EXON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 143,1 | 455,5 | MantaBND:6918:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:6918:0:0:0:0:0:0 | TRANSLOCATION | BND | chr17 | 67743640 | chr17 | 67743532 | NOL11 | INTRON:17 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 143,1 | 455,5 | MantaBND:6918:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:11517:0:0:0:0:0:1 | TRANSLOCATION | BND | chr20 | 16406398 | chr20 | 16406495 | KIF16B | EXON:16 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 195,1 | 569,8 | MantaBND:11517:0:0:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:11517:0:0:0:0:0:0 | TRANSLOCATION | BND | chr20 | 16406491 | chr20 | 16406402 | KIF16B | INTRON:15 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 195,1 | 569,8 | MantaBND:11517:0:0:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:22577:22577:0:0:0:0 | TRANSLOCATION | BND | chr22 | 30935181 | chr22 | 30935272 | MORC2 | INTRON:18 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 262,2 | 721,6 | MantaBND:0:22577:22577:0:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:22577:22577:0:0:0:1 | TRANSLOCATION | BND | chr22 | 30935267 | chr22 | 30935186 | MORC2 | EXON:18 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 262,2 | 721,6 | MantaBND:0:22577:22577:0:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:181:0:0:1:0:0:0 | TRANSLOCATION | BND | chrX | 36014844 | chrX | 36014953 | CFAP47 | EXON:22 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 84,2 | 232,3 | MantaBND:181:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:181:0:0:1:0:0:1 | TRANSLOCATION | BND | chrX | 36014949 | chrX | 36014848 | CFAP47 | INTRON:22 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 84,2 | 232,3 | MantaBND:181:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:250:0:0:1:0:0:1 | TRANSLOCATION | BND | chrX | 46679619 | chrX | 46679758 | SLC9A7 | INTRON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 135,1 | 377,8 | MantaBND:250:0:0:1:0:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:250:0:0:1:0:0:0 | TRANSLOCATION | BND | chrX | 46679751 | chrX | 46679626 | SLC9A7 | EXON:3 | + | INTERGENIC | INTERGENIC | - | . | MinSomaticScore | 0 | no | . | 135,1 | 377,8 | MantaBND:250:0:0:1:0:0:1 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaDEL:0:668:668:8:0:0 | DELETION | DEL | chrX | 49039493 | chrX | 49039547 | TFE3 | INTRON:2 | . | INTERGENIC | INTERGENIC | . | . | PASS | -54 | no | . | 275,0 | 1251,23 | |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:1157:1157:34:2:0:1 | TRANSLOCATION | BND | chrX | 77506783 | chrX | 77506928 | ATRX | EXON:35 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 263,8 | 558,11 | MantaBND:0:1157:1157:34:2:0:0 |
| 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 | MantaBND:0:1157:1157:34:2:0:0 | TRANSLOCATION | BND | chrX | 77506922 | chrX | 77506789 | ATRX | EXON:35 | + | INTERGENIC | INTERGENIC | - | . | PASS | 0 | no | . | 263,8 | 558,11 | MantaBND:0:1157:1157:34:2:0:1 |
114 rows