{
"sequencing_library_id": "FFPE_HD789_01_p2_gDNA_03_A23WJ5GLT4_1",
"secondary_sequencing_library_id": "NA12878_c_0002_gDNA_0005_B23KYWJLT4_1",
"data_source": "altera_inhouse_dna",
"harmonized_software_version": "70824045524a55c23c199744bf0f4cdef64d70d6",
"software_version": "44c19e3df8f656f58cb9ee7cf60c60a25f789383",
"harmonized_s3_path": "s3://natera-platform-sandbox/pipeline-outputs/aih_dev/altera_inhouse_dna/hmnz_cgp_dna_exp0035__70824045--20260606-022813",
"s3_path": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0035/tools__44c19e3d--20260605-213512",
"s3_path_params": "s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0035/tools__44c19e3d--20260605-213512/pipeline_info/params_2026-06-05_21-36-20.json",
"s3_path_qc": null,
"altera_exact_report_details": null,
"qc": {
"calculated_sex": "XY",
"calculated_sex_secondary": "XX",
"tumor_normal_correlation": 0.5186,
"tumor_contamination": 57.577,
"normal_contamination": 0.079,
"tso500_wetlab_pass": null,
"tso500_seq_pass": null
},
"harmonized_input_file_status": {
"snv_somatic": true,
"snv_somatic_phased": true,
"snv_germline": true,
"cnv": true,
"sv": true,
"fusion": false,
"splice": false,
"tmb": true,
"msi": true,
"hrd_scarhrd": true,
"hrd_tih": true,
"hla": true,
"chip": true
},
"harmonized_summary_stats": {
"somatic_snv_num": 52260,
"somatic_indel_num": 6343,
"somatic_hotspot_num": 6,
"somatic_variant_phased_num": 27581,
"somatic_cnv_num": 14598,
"somatic_cnv_del_num": 819,
"somatic_cnv_amp_num": 13779,
"somatic_cnv_segment_num": 533,
"somatic_sv_fusion_num": 332,
"somatic_sv_fusion_actionable_num": 9,
"chip_variant_num": 31417,
"germline_snv_num": 29143,
"germline_indel_num": 2094,
"germline_snv_hrr_num": 141,
"germline_indel_hrr_num": 44,
"germline_cnv_hrr_num": null,
"tumor_purity": 0.538959423882575,
"tumor_ploidy": 2.79537276493637,
"scarhrd_score": 71.0,
"scarhrd_status": "HRD_pos",
"tih_hrd_score": 0.404509576123926,
"tih_hrd_status": "HRD_pos",
"tso500_gis": null,
"tso500_hrd_status": null,
"msi_status": "MSI-H",
"msi_score": 99.44,
"tmb_status": "HIGH",
"tmb_score": 285.8891,
"rna_fusion_total_num": null,
"rna_fusion_filtered_num": null,
"tso500_overlap_rna_fusion_total_num": null,
"rna_fusion_actionable_num": null,
"rna_fusion_filtered_and_actionable_num": null,
"tso500_overlap_rna_fusion_filtered_num": null,
"rna_exon_skipping_total_num": null,
"rna_exon_skipping_actionable_num": null,
"tso500_overlap_somatic_snv_num": 1111,
"tso500_overlap_somatic_indel_num": 111,
"tso500_overlap_somatic_hotspot_num": 6,
"tso500_overlap_somatic_variant_phased_num": 774,
"tso500_overlap_somatic_cnv_num": 398,
"tso500_overlap_somatic_cnv_del_num": 21,
"tso500_overlap_somatic_cnv_amp_num": 377
}
}