File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/81ca32c7f937304605598f41a9d5a2/.command.log
Size
853 bytes
Task
NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_BIOMARKERS:HARMONIZE_BIOMARKERS_ALTERA_INHOUSE_DNA:ALTERA_INHOUSE_DNA_PARSE_TMB (1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0035/tools__44c19e3d--20260605-213512/variant_calling/tmb/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.tmb.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/81ca32c7f937304605598f41a9d5a2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/81ca32c7f937304605598f41a9d5a2/.command.run
==> STAGING COMPLETE (3 inputs)

Parsing TMB from: 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.tmb.csv
  Nonsyn TMB: 11.0689
  TMB Category: HIGH
Harmonized TMB CSV written to: 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tmb.hmnz.csv