File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/81ca32c7f937304605598f41a9d5a2/.command.sh
Size
581 bytes
Task
NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_BIOMARKERS:HARMONIZE_BIOMARKERS_ALTERA_INHOUSE_DNA:ALTERA_INHOUSE_DNA_PARSE_TMB (1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

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#!/bin/bash -euo pipefail
altera_inhouse_dna_parse_tmb.py \
    1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.tmb.csv \
    --output 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tmb.hmnz.csv \
    --sample-id 1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_HARMONIZE:HARMONIZE:HARMONIZE_BIOMARKERS:HARMONIZE_BIOMARKERS_ALTERA_INHOUSE_DNA:ALTERA_INHOUSE_DNA_PARSE_TMB":
    python: $(python --version | sed 's/Python //')
    altera_inhouse_dna_parse_tmb: "1.0.0"
END_VERSIONS