.command.log - Workdir - NFCORE_HARMONIZE:HARMONIZE:FILTER_HOTSPOT_VCF (1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_7_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/806aaad509d51ff63286f4629ef11c/.command.log
Size: 822 bytes
Task: NFCORE_HARMONIZE:HARMONIZE:FILTER_HOTSPOT_VCF (1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_7_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/d2ab3cd7667a5a050355e11a7b6472/1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_7_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.tnseq.hmnz.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-02a7a0a2-75c7-4a9f-81d6-141deaf746e1/05/276485ce98c8d6e32e900e5b62d456/FINAL_hotspot_list_07302025_hg38_sorted_w_anno_mods.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/806aaad509d51ff63286f4629ef11c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/806aaad509d51ff63286f4629ef11c/.command.run
==> STAGING COMPLETE (4 inputs)

Loaded 73 hotspot regions from FINAL_hotspot_list_07302025_hg38_sorted_w_anno_mods.bed
Detected annotation format: CSQ
Filtered: 2387 PASS variants → 1 hotspot variants (1 unique)