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AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume index-tso500-20260511231055
Error Report
Error executing process > 'SAMTOOLS_INDEX (LS0190_S22.markdup.bam)' Caused by: K8s pod 'nf-01ef8a029c94916ea4155813638123ec-1d593-h9pbq' execution failed - reason: Evicted - message: Pod ephemeral local storage usage exceeds the total limit of containers 20Gi. Command executed: samtools index -@ 4 'LS0190_S22.markdup.bam' Command exit status: - Command output: (empty) Work dir: s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work/01/ef8a029c94916ea4155813638123ec Container: 644019535899.dkr.ecr.us-west-2.amazonaws.com/lcgp/rmdupes:bwa_mem-0.0.1 Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / fsdx-dev
- Session ID
- d4e909db-68d5-4692-9025-28c6eb9f14fe
- Source
- /code/workflows/index_tso500_markdup_bams.nf
- Work Dir
- s3://natera-rnd-fsdx-dev-nextflow-scratch-01/work
- Submitted By
- aschultz
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.48
- Outputs
- 13.5 TB
- Started
- May 11, 2026 4:11 PM
- Completed
- May 11, 2026 4:19 PM
- Duration
- 8m 27s
- Post-workflow Transfer
- 0s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 80 / 320 / 320.0 GB