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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L001/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:13 PM

Content

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
1 52941-ND0952_fetal GTTGTTCG CCAACTTC 184319489 0.117919
1 fetal_AF_40 CGGTTGTT GTGGTATG 180274761 0.115332
1 fetal_AF_20 ACTGAGGT GTCAACAG 184213669 0.117852
1 fetal_AF_10 TGAAGACG ACATGCCA 183913296 0.117660
1 fetal_AF_5 GTTACGCA ATGGCGAT 180905771 0.115736
1 fetal_AF_2_5 AGCGTGTT CTTCGCAA 219828670 0.140637
1 fetal_AF_1_25 GATCGAGT GACGAACT 175082715 0.112010
1 52943-ND0958_maternal ACAGCTCA TACTGCTC 194656070 0.124532
1 GTTGTTCG GTGGTATG 53836 0.012463 0.000034
1 GTTGTTCG GTCAACAG 62225 0.014405 0.000040
1 GTTGTTCG ACATGCCA 72115 0.016695 0.000046
1 GTTGTTCG ATGGCGAT 81965 0.018975 0.000052
1 GTTGTTCG CTTCGCAA 61854 0.014320 0.000040
1 GTTGTTCG GACGAACT 58723 0.013595 0.000038
1 GTTGTTCG TACTGCTC 65212 0.015097 0.000042
1 CGGTTGTT CCAACTTC 75091 0.017384 0.000048
1 CGGTTGTT GTCAACAG 80754 0.018695 0.000052
1 CGGTTGTT ACATGCCA 77546 0.017952 0.000050
1 CGGTTGTT ATGGCGAT 76328 0.017670 0.000049
1 CGGTTGTT CTTCGCAA 92744 0.021471 0.000059
1 CGGTTGTT GACGAACT 64743 0.014988 0.000041
1 CGGTTGTT TACTGCTC 62367 0.014438 0.000040
1 ACTGAGGT CCAACTTC 65838 0.015242 0.000042
1 ACTGAGGT GTGGTATG 70056 0.016218 0.000045
1 ACTGAGGT ACATGCCA 67968 0.015735 0.000043
1 ACTGAGGT ATGGCGAT 71837 0.016631 0.000046
1 ACTGAGGT CTTCGCAA 68011 0.015745 0.000044
1 ACTGAGGT GACGAACT 70481 0.016317 0.000045
1 ACTGAGGT TACTGCTC 64019 0.014821 0.000041
1 TGAAGACG CCAACTTC 63613 0.014727 0.000041
1 TGAAGACG GTGGTATG 48042 0.011122 0.000031
1 TGAAGACG GTCAACAG 53090 0.012291 0.000034
1 TGAAGACG ATGGCGAT 66027 0.015286 0.000042
1 TGAAGACG CTTCGCAA 54806 0.012688 0.000035
1 TGAAGACG GACGAACT 48132 0.011143 0.000031
1 TGAAGACG TACTGCTC 56338 0.013043 0.000036
1 GTTACGCA CCAACTTC 546305 0.126473 0.000350
1 GTTACGCA GTGGTATG 59868 0.013860 0.000038
1 GTTACGCA GTCAACAG 61054 0.014134 0.000039
1 GTTACGCA ACATGCCA 68980 0.015969 0.000044
1 GTTACGCA CTTCGCAA 60644 0.014039 0.000039
1 GTTACGCA GACGAACT 56587 0.013100 0.000036
1 GTTACGCA TACTGCTC 66612 0.015421 0.000043
1 AGCGTGTT CCAACTTC 88049 0.020384 0.000056
1 AGCGTGTT GTGGTATG 95852 0.022190 0.000061
1 AGCGTGTT GTCAACAG 91763 0.021244 0.000059
1 AGCGTGTT ACATGCCA 81269 0.018814 0.000052
1 AGCGTGTT ATGGCGAT 84670 0.019602 0.000054
1 AGCGTGTT GACGAACT 65116 0.015075 0.000042
1 AGCGTGTT TACTGCTC 74927 0.017346 0.000048
1 GATCGAGT CCAACTTC 65194 0.015093 0.000042
1 GATCGAGT GTGGTATG 65945 0.015267 0.000042
1 GATCGAGT GTCAACAG 78008 0.018059 0.000050
1 GATCGAGT ACATGCCA 66896 0.015487 0.000043
1 GATCGAGT ATGGCGAT 77069 0.017842 0.000049
1 GATCGAGT CTTCGCAA 59743 0.013831 0.000038
1 GATCGAGT TACTGCTC 64556 0.014945 0.000041
1 ACAGCTCA CCAACTTC 136028 0.031491 0.000087
1 ACAGCTCA GTGGTATG 50126 0.011604 0.000032
1 ACAGCTCA GTCAACAG 61301 0.014192 0.000039
1 ACAGCTCA ACATGCCA 65615 0.015190 0.000042
1 ACAGCTCA ATGGCGAT 63002 0.014585 0.000040
1 ACAGCTCA CTTCGCAA 60998 0.014121 0.000039
1 ACAGCTCA GACGAACT 49614 0.011486 0.000032
65 rows