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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L004/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:13 PM

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
4 52941-ND0952_fetal GTTGTTCG CCAACTTC 182835190 0.117860
4 fetal_AF_40 CGGTTGTT GTGGTATG 177601537 0.114486
4 fetal_AF_20 ACTGAGGT GTCAACAG 183235035 0.118118
4 fetal_AF_10 TGAAGACG ACATGCCA 180844286 0.116577
4 fetal_AF_5 GTTACGCA ATGGCGAT 178427692 0.115019
4 fetal_AF_2_5 AGCGTGTT CTTCGCAA 217346380 0.140107
4 fetal_AF_1_25 GATCGAGT GACGAACT 172137290 0.110964
4 52943-ND0958_maternal ACAGCTCA TACTGCTC 192195773 0.123894
4 GTTGTTCG GTGGTATG 54905 0.012711 0.000035
4 GTTGTTCG GTCAACAG 64026 0.014823 0.000041
4 GTTGTTCG ACATGCCA 73603 0.017040 0.000047
4 GTTGTTCG ATGGCGAT 84157 0.019483 0.000054
4 GTTGTTCG CTTCGCAA 62502 0.014470 0.000040
4 GTTGTTCG GACGAACT 59536 0.013783 0.000038
4 GTTGTTCG TACTGCTC 66812 0.015468 0.000043
4 CGGTTGTT CCAACTTC 76903 0.017804 0.000050
4 CGGTTGTT GTCAACAG 81651 0.018903 0.000053
4 CGGTTGTT ACATGCCA 80154 0.018556 0.000052
4 CGGTTGTT ATGGCGAT 76871 0.017796 0.000050
4 CGGTTGTT CTTCGCAA 96711 0.022390 0.000062
4 CGGTTGTT GACGAACT 65261 0.015109 0.000042
4 CGGTTGTT TACTGCTC 63735 0.014755 0.000041
4 ACTGAGGT CCAACTTC 67143 0.015544 0.000043
4 ACTGAGGT GTGGTATG 71146 0.016471 0.000046
4 ACTGAGGT ACATGCCA 69489 0.016087 0.000045
4 ACTGAGGT ATGGCGAT 73606 0.017041 0.000047
4 ACTGAGGT CTTCGCAA 69118 0.016002 0.000045
4 ACTGAGGT GACGAACT 70446 0.016309 0.000045
4 ACTGAGGT TACTGCTC 65204 0.015095 0.000042
4 TGAAGACG CCAACTTC 64396 0.014908 0.000042
4 TGAAGACG GTGGTATG 49536 0.011468 0.000032
4 TGAAGACG GTCAACAG 53920 0.012483 0.000035
4 TGAAGACG ATGGCGAT 67073 0.015528 0.000043
4 TGAAGACG CTTCGCAA 56164 0.013003 0.000036
4 TGAAGACG GACGAACT 48450 0.011217 0.000031
4 TGAAGACG TACTGCTC 56719 0.013131 0.000037
4 GTTACGCA CCAACTTC 481903 0.111566 0.000311
4 GTTACGCA GTGGTATG 60090 0.013911 0.000039
4 GTTACGCA GTCAACAG 62547 0.014480 0.000040
4 GTTACGCA ACATGCCA 70029 0.016212 0.000045
4 GTTACGCA CTTCGCAA 62253 0.014412 0.000040
4 GTTACGCA GACGAACT 57177 0.013237 0.000037
4 GTTACGCA TACTGCTC 67410 0.015606 0.000043
4 AGCGTGTT CCAACTTC 90395 0.020927 0.000058
4 AGCGTGTT GTGGTATG 97355 0.022539 0.000063
4 AGCGTGTT GTCAACAG 93579 0.021665 0.000060
4 AGCGTGTT ACATGCCA 83429 0.019315 0.000054
4 AGCGTGTT ATGGCGAT 85798 0.019863 0.000055
4 AGCGTGTT GACGAACT 65876 0.015251 0.000042
4 AGCGTGTT TACTGCTC 75141 0.017396 0.000048
4 GATCGAGT CCAACTTC 66256 0.015339 0.000043
4 GATCGAGT GTGGTATG 66552 0.015407 0.000043
4 GATCGAGT GTCAACAG 79929 0.018504 0.000052
4 GATCGAGT ACATGCCA 68587 0.015879 0.000044
4 GATCGAGT ATGGCGAT 78877 0.018261 0.000051
4 GATCGAGT CTTCGCAA 61401 0.014215 0.000040
4 GATCGAGT TACTGCTC 65261 0.015109 0.000042
4 ACAGCTCA CCAACTTC 136029 0.031492 0.000088
4 ACAGCTCA GTGGTATG 50354 0.011657 0.000032
4 ACAGCTCA GTCAACAG 61553 0.014250 0.000040
4 ACAGCTCA ACATGCCA 67092 0.015533 0.000043
4 ACAGCTCA ATGGCGAT 63664 0.014739 0.000041
4 ACAGCTCA CTTCGCAA 62142 0.014387 0.000040
4 ACAGCTCA GACGAACT 49543 0.011470 0.000032
65 rows