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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L002/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:14 PM

Content

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
2 52941-ND0952_fetal GTTGTTCG CCAACTTC 182721841 0.116858
2 fetal_AF_40 CGGTTGTT GTGGTATG 179733731 0.114947
2 fetal_AF_20 ACTGAGGT GTCAACAG 184155228 0.117775
2 fetal_AF_10 TGAAGACG ACATGCCA 184124442 0.117755
2 fetal_AF_5 GTTACGCA ATGGCGAT 182255772 0.116560
2 fetal_AF_2_5 AGCGTGTT CTTCGCAA 220781839 0.141199
2 fetal_AF_1_25 GATCGAGT GACGAACT 176053498 0.112594
2 52943-ND0958_maternal ACAGCTCA TACTGCTC 195257856 0.124876
2 GTTGTTCG GTGGTATG 54513 0.012426 0.000035
2 GTTGTTCG GTCAACAG 63484 0.014471 0.000041
2 GTTGTTCG ACATGCCA 72444 0.016514 0.000046
2 GTTGTTCG ATGGCGAT 83958 0.019139 0.000054
2 GTTGTTCG CTTCGCAA 62783 0.014312 0.000040
2 GTTGTTCG GACGAACT 59249 0.013506 0.000038
2 GTTGTTCG TACTGCTC 66361 0.015127 0.000042
2 CGGTTGTT CCAACTTC 77442 0.017653 0.000050
2 CGGTTGTT GTCAACAG 82371 0.018777 0.000053
2 CGGTTGTT ACATGCCA 78433 0.017879 0.000050
2 CGGTTGTT ATGGCGAT 78171 0.017819 0.000050
2 CGGTTGTT CTTCGCAA 96727 0.022049 0.000062
2 CGGTTGTT GACGAACT 66881 0.015246 0.000043
2 CGGTTGTT TACTGCTC 64380 0.014676 0.000041
2 ACTGAGGT CCAACTTC 67129 0.015302 0.000043
2 ACTGAGGT GTGGTATG 72207 0.016460 0.000046
2 ACTGAGGT ACATGCCA 69660 0.015879 0.000045
2 ACTGAGGT ATGGCGAT 74410 0.016962 0.000048
2 ACTGAGGT CTTCGCAA 69827 0.015917 0.000045
2 ACTGAGGT GACGAACT 72701 0.016572 0.000046
2 ACTGAGGT TACTGCTC 65636 0.014962 0.000042
2 TGAAGACG CCAACTTC 65496 0.014930 0.000042
2 TGAAGACG GTGGTATG 49272 0.011232 0.000032
2 TGAAGACG GTCAACAG 54334 0.012386 0.000035
2 TGAAGACG ATGGCGAT 68618 0.015642 0.000044
2 TGAAGACG CTTCGCAA 56030 0.012772 0.000036
2 TGAAGACG GACGAACT 49693 0.011328 0.000032
2 TGAAGACG TACTGCTC 57683 0.013149 0.000037
2 GTTACGCA CCAACTTC 519118 0.118335 0.000332
2 GTTACGCA GTGGTATG 61642 0.014052 0.000039
2 GTTACGCA GTCAACAG 63769 0.014536 0.000041
2 GTTACGCA ACATGCCA 70057 0.015970 0.000045
2 GTTACGCA CTTCGCAA 62986 0.014358 0.000040
2 GTTACGCA GACGAACT 58417 0.013316 0.000037
2 GTTACGCA TACTGCTC 69271 0.015791 0.000044
2 AGCGTGTT CCAACTTC 90088 0.020536 0.000058
2 AGCGTGTT GTGGTATG 97141 0.022144 0.000062
2 AGCGTGTT GTCAACAG 93952 0.021417 0.000060
2 AGCGTGTT ACATGCCA 83153 0.018955 0.000053
2 AGCGTGTT ATGGCGAT 87780 0.020010 0.000056
2 AGCGTGTT GACGAACT 67248 0.015329 0.000043
2 AGCGTGTT TACTGCTC 76604 0.017462 0.000049
2 GATCGAGT CCAACTTC 66912 0.015253 0.000043
2 GATCGAGT GTGGTATG 67878 0.015473 0.000043
2 GATCGAGT GTCAACAG 80743 0.018406 0.000052
2 GATCGAGT ACATGCCA 68205 0.015548 0.000044
2 GATCGAGT ATGGCGAT 80215 0.018285 0.000051
2 GATCGAGT CTTCGCAA 62595 0.014269 0.000040
2 GATCGAGT TACTGCTC 66404 0.015137 0.000042
2 ACAGCTCA CCAACTTC 135785 0.030953 0.000087
2 ACAGCTCA GTGGTATG 50729 0.011564 0.000032
2 ACAGCTCA GTCAACAG 61611 0.014044 0.000039
2 ACAGCTCA ACATGCCA 66859 0.015241 0.000043
2 ACAGCTCA ATGGCGAT 64729 0.014755 0.000041
2 ACAGCTCA CTTCGCAA 62571 0.014263 0.000040
2 ACAGCTCA GACGAACT 50504 0.011513 0.000032
65 rows