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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L003/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:14 PM

Content

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
3 52941-ND0952_fetal GTTGTTCG CCAACTTC 183685519 0.117907
3 fetal_AF_40 CGGTTGTT GTGGTATG 178406402 0.114518
3 fetal_AF_20 ACTGAGGT GTCAACAG 183666676 0.117895
3 fetal_AF_10 TGAAGACG ACATGCCA 182799401 0.117338
3 fetal_AF_5 GTTACGCA ATGGCGAT 178989382 0.114893
3 fetal_AF_2_5 AGCGTGTT CTTCGCAA 219565820 0.140938
3 fetal_AF_1_25 GATCGAGT GACGAACT 173528970 0.111388
3 52943-ND0958_maternal ACAGCTCA TACTGCTC 193376529 0.124128
3 GTTGTTCG GTGGTATG 55012 0.012672 0.000035
3 GTTGTTCG GTCAACAG 63434 0.014612 0.000041
3 GTTGTTCG ACATGCCA 73481 0.016926 0.000047
3 GTTGTTCG ATGGCGAT 84032 0.019357 0.000054
3 GTTGTTCG CTTCGCAA 63143 0.014545 0.000041
3 GTTGTTCG GACGAACT 59349 0.013671 0.000038
3 GTTGTTCG TACTGCTC 67104 0.015458 0.000043
3 CGGTTGTT CCAACTTC 77821 0.017926 0.000050
3 CGGTTGTT GTCAACAG 81913 0.018869 0.000053
3 CGGTTGTT ACATGCCA 79012 0.018201 0.000051
3 CGGTTGTT ATGGCGAT 77778 0.017916 0.000050
3 CGGTTGTT CTTCGCAA 98046 0.022585 0.000063
3 CGGTTGTT GACGAACT 65433 0.015073 0.000042
3 CGGTTGTT TACTGCTC 64325 0.014817 0.000041
3 ACTGAGGT CCAACTTC 67892 0.015639 0.000044
3 ACTGAGGT GTGGTATG 71752 0.016528 0.000046
3 ACTGAGGT ACATGCCA 68523 0.015784 0.000044
3 ACTGAGGT ATGGCGAT 73186 0.016859 0.000047
3 ACTGAGGT CTTCGCAA 69137 0.015926 0.000044
3 ACTGAGGT GACGAACT 71081 0.016374 0.000046
3 ACTGAGGT TACTGCTC 65273 0.015036 0.000042
3 TGAAGACG CCAACTTC 65253 0.015031 0.000042
3 TGAAGACG GTGGTATG 49476 0.011397 0.000032
3 TGAAGACG GTCAACAG 54087 0.012459 0.000035
3 TGAAGACG ATGGCGAT 67825 0.015624 0.000044
3 TGAAGACG CTTCGCAA 55731 0.012838 0.000036
3 TGAAGACG GACGAACT 48697 0.011217 0.000031
3 TGAAGACG TACTGCTC 56799 0.013084 0.000036
3 GTTACGCA CCAACTTC 499004 0.114946 0.000320
3 GTTACGCA GTGGTATG 60221 0.013872 0.000039
3 GTTACGCA GTCAACAG 62629 0.014427 0.000040
3 GTTACGCA ACATGCCA 69623 0.016038 0.000045
3 GTTACGCA CTTCGCAA 62271 0.014344 0.000040
3 GTTACGCA GACGAACT 56742 0.013071 0.000036
3 GTTACGCA TACTGCTC 67509 0.015551 0.000043
3 AGCGTGTT CCAACTTC 91002 0.020962 0.000058
3 AGCGTGTT GTGGTATG 97881 0.022547 0.000063
3 AGCGTGTT GTCAACAG 93825 0.021613 0.000060
3 AGCGTGTT ACATGCCA 83005 0.019120 0.000053
3 AGCGTGTT ATGGCGAT 86736 0.019980 0.000056
3 AGCGTGTT GACGAACT 65961 0.015194 0.000042
3 AGCGTGTT TACTGCTC 75763 0.017452 0.000049
3 GATCGAGT CCAACTTC 66786 0.015384 0.000043
3 GATCGAGT GTGGTATG 66724 0.015370 0.000043
3 GATCGAGT GTCAACAG 80370 0.018513 0.000052
3 GATCGAGT ACATGCCA 68142 0.015697 0.000044
3 GATCGAGT ATGGCGAT 78880 0.018170 0.000051
3 GATCGAGT CTTCGCAA 61783 0.014232 0.000040
3 GATCGAGT TACTGCTC 64863 0.014941 0.000042
3 ACAGCTCA CCAACTTC 135706 0.031260 0.000087
3 ACAGCTCA GTGGTATG 50134 0.011548 0.000032
3 ACAGCTCA GTCAACAG 60910 0.014031 0.000039
3 ACAGCTCA ACATGCCA 66048 0.015214 0.000042
3 ACAGCTCA ATGGCGAT 63286 0.014578 0.000041
3 ACAGCTCA CTTCGCAA 61350 0.014132 0.000039
3 ACAGCTCA GACGAACT 49436 0.011388 0.000032
65 rows