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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L006/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:14 PM

Content

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
6 52941-ND0952_fetal GTTGTTCG CCAACTTC 178551696 0.115543
6 fetal_AF_40 CGGTTGTT GTGGTATG 176586856 0.114271
6 fetal_AF_20 ACTGAGGT GTCAACAG 182538560 0.118123
6 fetal_AF_10 TGAAGACG ACATGCCA 180888788 0.117055
6 fetal_AF_5 GTTACGCA ATGGCGAT 178184031 0.115305
6 fetal_AF_2_5 AGCGTGTT CTTCGCAA 222296419 0.143850
6 fetal_AF_1_25 GATCGAGT GACGAACT 176486111 0.114206
6 52943-ND0958_maternal ACAGCTCA TACTGCTC 191510711 0.123929
6 GTTGTTCG GTGGTATG 55471 0.012177 0.000036
6 GTTGTTCG GTCAACAG 65980 0.014483 0.000043
6 GTTGTTCG ACATGCCA 76850 0.016869 0.000050
6 GTTGTTCG ATGGCGAT 88464 0.019419 0.000057
6 GTTGTTCG CTTCGCAA 65190 0.014310 0.000042
6 GTTGTTCG GACGAACT 61078 0.013407 0.000040
6 GTTGTTCG TACTGCTC 71054 0.015597 0.000046
6 CGGTTGTT CCAACTTC 80341 0.017636 0.000052
6 CGGTTGTT GTCAACAG 87783 0.019269 0.000057
6 CGGTTGTT ACATGCCA 85683 0.018808 0.000055
6 CGGTTGTT ATGGCGAT 84634 0.018578 0.000055
6 CGGTTGTT CTTCGCAA 98957 0.021722 0.000064
6 CGGTTGTT GACGAACT 73253 0.016080 0.000047
6 CGGTTGTT TACTGCTC 69779 0.015317 0.000045
6 ACTGAGGT CCAACTTC 72305 0.015872 0.000047
6 ACTGAGGT GTGGTATG 77082 0.016920 0.000050
6 ACTGAGGT ACATGCCA 75773 0.016633 0.000049
6 ACTGAGGT ATGGCGAT 81957 0.017991 0.000053
6 ACTGAGGT CTTCGCAA 75120 0.016490 0.000049
6 ACTGAGGT GACGAACT 79087 0.017361 0.000051
6 ACTGAGGT TACTGCTC 70108 0.015390 0.000045
6 TGAAGACG CCAACTTC 67634 0.014846 0.000044
6 TGAAGACG GTGGTATG 50822 0.011156 0.000033
6 TGAAGACG GTCAACAG 56564 0.012416 0.000037
6 TGAAGACG ATGGCGAT 71908 0.015785 0.000047
6 TGAAGACG CTTCGCAA 58831 0.012914 0.000038
6 TGAAGACG GACGAACT 51273 0.011255 0.000033
6 TGAAGACG TACTGCTC 61358 0.013469 0.000040
6 GTTACGCA CCAACTTC 439206 0.096411 0.000284
6 GTTACGCA GTGGTATG 64550 0.014169 0.000042
6 GTTACGCA GTCAACAG 67597 0.014838 0.000044
6 GTTACGCA ACATGCCA 76059 0.016696 0.000049
6 GTTACGCA CTTCGCAA 66987 0.014704 0.000043
6 GTTACGCA GACGAACT 60841 0.013355 0.000039
6 GTTACGCA TACTGCTC 73093 0.016045 0.000047
6 AGCGTGTT CCAACTTC 96946 0.021281 0.000063
6 AGCGTGTT GTGGTATG 104617 0.022965 0.000068
6 AGCGTGTT GTCAACAG 104408 0.022919 0.000068
6 AGCGTGTT ACATGCCA 91825 0.020157 0.000059
6 AGCGTGTT ATGGCGAT 97145 0.021324 0.000063
6 AGCGTGTT GACGAACT 72739 0.015967 0.000047
6 AGCGTGTT TACTGCTC 84277 0.018500 0.000055
6 GATCGAGT CCAACTTC 71339 0.015660 0.000046
6 GATCGAGT GTGGTATG 73524 0.016139 0.000048
6 GATCGAGT GTCAACAG 89239 0.019589 0.000058
6 GATCGAGT ACATGCCA 75556 0.016585 0.000049
6 GATCGAGT ATGGCGAT 88327 0.019389 0.000057
6 GATCGAGT CTTCGCAA 66077 0.014505 0.000043
6 GATCGAGT TACTGCTC 72905 0.016004 0.000047
6 ACAGCTCA CCAACTTC 131729 0.028916 0.000085
6 ACAGCTCA GTGGTATG 52176 0.011453 0.000034
6 ACAGCTCA GTCAACAG 63355 0.013907 0.000041
6 ACAGCTCA ACATGCCA 71306 0.015653 0.000046
6 ACAGCTCA ATGGCGAT 67524 0.014822 0.000044
6 ACAGCTCA CTTCGCAA 64508 0.014160 0.000042
6 ACAGCTCA GACGAACT 53370 0.011715 0.000035
65 rows