File Info
- Filename
- Index_Hopping_Counts.csv
- Full Path
- s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L007/output/Reports/Index_Hopping_Counts.csv
- Size
- 3.0 KB
- Workflow Run
- lcvs-exp2-1
- Published
- Jan 30, 2026 12:15 PM
Content
View in new tab| Lane | SampleID | index | index2 | # Reads | % of Hopped Reads | % of All Reads |
| 7 | 52941-ND0952_fetal | GTTGTTCG | CCAACTTC | 178623071 | 0.115763 | |
| 7 | fetal_AF_40 | CGGTTGTT | GTGGTATG | 176841781 | 0.114609 | |
| 7 | fetal_AF_20 | ACTGAGGT | GTCAACAG | 182334385 | 0.118168 | |
| 7 | fetal_AF_10 | TGAAGACG | ACATGCCA | 179928538 | 0.116609 | |
| 7 | fetal_AF_5 | GTTACGCA | ATGGCGAT | 178409974 | 0.115625 | |
| 7 | fetal_AF_2_5 | AGCGTGTT | CTTCGCAA | 221189720 | 0.143350 | |
| 7 | fetal_AF_1_25 | GATCGAGT | GACGAACT | 176137000 | 0.114152 | |
| 7 | 52943-ND0958_maternal | ACAGCTCA | TACTGCTC | 191587767 | 0.124165 | |
| 7 | GTTGTTCG | GTGGTATG | 54871 | 0.012223 | 0.000036 | |
| 7 | GTTGTTCG | GTCAACAG | 65480 | 0.014587 | 0.000042 | |
| 7 | GTTGTTCG | ACATGCCA | 77054 | 0.017165 | 0.000050 | |
| 7 | GTTGTTCG | ATGGCGAT | 87247 | 0.019435 | 0.000057 | |
| 7 | GTTGTTCG | CTTCGCAA | 64520 | 0.014373 | 0.000042 | |
| 7 | GTTGTTCG | GACGAACT | 60207 | 0.013412 | 0.000039 | |
| 7 | GTTGTTCG | TACTGCTC | 69688 | 0.015524 | 0.000045 | |
| 7 | CGGTTGTT | CCAACTTC | 79048 | 0.017609 | 0.000051 | |
| 7 | CGGTTGTT | GTCAACAG | 86101 | 0.019180 | 0.000056 | |
| 7 | CGGTTGTT | ACATGCCA | 86878 | 0.019353 | 0.000056 | |
| 7 | CGGTTGTT | ATGGCGAT | 83794 | 0.018666 | 0.000054 | |
| 7 | CGGTTGTT | CTTCGCAA | 97210 | 0.021655 | 0.000063 | |
| 7 | CGGTTGTT | GACGAACT | 71767 | 0.015987 | 0.000047 | |
| 7 | CGGTTGTT | TACTGCTC | 69189 | 0.015413 | 0.000045 | |
| 7 | ACTGAGGT | CCAACTTC | 70429 | 0.015689 | 0.000046 | |
| 7 | ACTGAGGT | GTGGTATG | 75784 | 0.016882 | 0.000049 | |
| 7 | ACTGAGGT | ACATGCCA | 77256 | 0.017210 | 0.000050 | |
| 7 | ACTGAGGT | ATGGCGAT | 81323 | 0.018116 | 0.000053 | |
| 7 | ACTGAGGT | CTTCGCAA | 74001 | 0.016485 | 0.000048 | |
| 7 | ACTGAGGT | GACGAACT | 78413 | 0.017468 | 0.000051 | |
| 7 | ACTGAGGT | TACTGCTC | 69837 | 0.015557 | 0.000045 | |
| 7 | TGAAGACG | CCAACTTC | 66183 | 0.014743 | 0.000043 | |
| 7 | TGAAGACG | GTGGTATG | 50218 | 0.011187 | 0.000033 | |
| 7 | TGAAGACG | GTCAACAG | 55450 | 0.012352 | 0.000036 | |
| 7 | TGAAGACG | ATGGCGAT | 70940 | 0.015803 | 0.000046 | |
| 7 | TGAAGACG | CTTCGCAA | 57948 | 0.012909 | 0.000038 | |
| 7 | TGAAGACG | GACGAACT | 50701 | 0.011294 | 0.000033 | |
| 7 | TGAAGACG | TACTGCTC | 60539 | 0.013486 | 0.000039 | |
| 7 | GTTACGCA | CCAACTTC | 419208 | 0.093384 | 0.000272 | |
| 7 | GTTACGCA | GTGGTATG | 63522 | 0.014150 | 0.000041 | |
| 7 | GTTACGCA | GTCAACAG | 67288 | 0.014989 | 0.000044 | |
| 7 | GTTACGCA | ACATGCCA | 76268 | 0.016990 | 0.000049 | |
| 7 | GTTACGCA | CTTCGCAA | 66479 | 0.014809 | 0.000043 | |
| 7 | GTTACGCA | GACGAACT | 60148 | 0.013399 | 0.000039 | |
| 7 | GTTACGCA | TACTGCTC | 71554 | 0.015940 | 0.000046 | |
| 7 | AGCGTGTT | CCAACTTC | 94917 | 0.021144 | 0.000062 | |
| 7 | AGCGTGTT | GTGGTATG | 101737 | 0.022663 | 0.000066 | |
| 7 | AGCGTGTT | GTCAACAG | 102921 | 0.022927 | 0.000067 | |
| 7 | AGCGTGTT | ACATGCCA | 92996 | 0.020716 | 0.000060 | |
| 7 | AGCGTGTT | ATGGCGAT | 95590 | 0.021294 | 0.000062 | |
| 7 | AGCGTGTT | GACGAACT | 71303 | 0.015884 | 0.000046 | |
| 7 | AGCGTGTT | TACTGCTC | 82245 | 0.018321 | 0.000053 | |
| 7 | GATCGAGT | CCAACTTC | 69803 | 0.015550 | 0.000045 | |
| 7 | GATCGAGT | GTGGTATG | 72660 | 0.016186 | 0.000047 | |
| 7 | GATCGAGT | GTCAACAG | 88263 | 0.019662 | 0.000057 | |
| 7 | GATCGAGT | ACATGCCA | 75751 | 0.016875 | 0.000049 | |
| 7 | GATCGAGT | ATGGCGAT | 87762 | 0.019550 | 0.000057 | |
| 7 | GATCGAGT | CTTCGCAA | 65604 | 0.014614 | 0.000043 | |
| 7 | GATCGAGT | TACTGCTC | 72102 | 0.016062 | 0.000047 | |
| 7 | ACAGCTCA | CCAACTTC | 129377 | 0.028820 | 0.000084 | |
| 7 | ACAGCTCA | GTGGTATG | 51453 | 0.011462 | 0.000033 | |
| 7 | ACAGCTCA | GTCAACAG | 63261 | 0.014092 | 0.000041 | |
| 7 | ACAGCTCA | ACATGCCA | 72326 | 0.016112 | 0.000047 | |
| 7 | ACAGCTCA | ATGGCGAT | 66167 | 0.014740 | 0.000043 | |
| 7 | ACAGCTCA | CTTCGCAA | 63978 | 0.014252 | 0.000041 | |
| 7 | ACAGCTCA | GACGAACT | 52309 | 0.011653 | 0.000034 |
65 rows