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Filename
Index_Hopping_Counts.csv
Full Path
s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/bclconvert/L008/output/Reports/Index_Hopping_Counts.csv
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3.0 KB
Workflow Run
lcvs-exp2-1
Published
Jan 30, 2026 12:16 PM

Content

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Lane SampleID index index2 # Reads % of Hopped Reads % of All Reads
8 52941-ND0952_fetal GTTGTTCG CCAACTTC 179321064 0.115812
8 fetal_AF_40 CGGTTGTT GTGGTATG 177355662 0.114543
8 fetal_AF_20 ACTGAGGT GTCAACAG 182658128 0.117967
8 fetal_AF_10 TGAAGACG ACATGCCA 180974585 0.116880
8 fetal_AF_5 GTTACGCA ATGGCGAT 178696960 0.115409
8 fetal_AF_2_5 AGCGTGTT CTTCGCAA 221460976 0.143028
8 fetal_AF_1_25 GATCGAGT GACGAACT 176152048 0.113765
8 52943-ND0958_maternal ACAGCTCA TACTGCTC 192226774 0.124147
8 GTTGTTCG GTGGTATG 56973 0.012372 0.000037
8 GTTGTTCG GTCAACAG 67460 0.014649 0.000044
8 GTTGTTCG ACATGCCA 79693 0.017306 0.000051
8 GTTGTTCG ATGGCGAT 90095 0.019565 0.000058
8 GTTGTTCG CTTCGCAA 66507 0.014442 0.000043
8 GTTGTTCG GACGAACT 62220 0.013511 0.000040
8 GTTGTTCG TACTGCTC 72663 0.015779 0.000047
8 CGGTTGTT CCAACTTC 81881 0.017781 0.000053
8 CGGTTGTT GTCAACAG 89054 0.019339 0.000058
8 CGGTTGTT ACATGCCA 88979 0.019322 0.000057
8 CGGTTGTT ATGGCGAT 86206 0.018720 0.000056
8 CGGTTGTT CTTCGCAA 98880 0.021472 0.000064
8 CGGTTGTT GACGAACT 73912 0.016050 0.000048
8 CGGTTGTT TACTGCTC 72072 0.015651 0.000047
8 ACTGAGGT CCAACTTC 73153 0.015886 0.000047
8 ACTGAGGT GTGGTATG 79126 0.017183 0.000051
8 ACTGAGGT ACATGCCA 78669 0.017083 0.000051
8 ACTGAGGT ATGGCGAT 83735 0.018183 0.000054
8 ACTGAGGT CTTCGCAA 76242 0.016556 0.000049
8 ACTGAGGT GACGAACT 80134 0.017401 0.000052
8 ACTGAGGT TACTGCTC 72700 0.015787 0.000047
8 TGAAGACG CCAACTTC 69426 0.015076 0.000045
8 TGAAGACG GTGGTATG 51377 0.011157 0.000033
8 TGAAGACG GTCAACAG 57589 0.012506 0.000037
8 TGAAGACG ATGGCGAT 73522 0.015966 0.000047
8 TGAAGACG CTTCGCAA 60114 0.013054 0.000039
8 TGAAGACG GACGAACT 52021 0.011297 0.000034
8 TGAAGACG TACTGCTC 62666 0.013608 0.000040
8 GTTACGCA CCAACTTC 408055 0.088611 0.000264
8 GTTACGCA GTGGTATG 65609 0.014247 0.000042
8 GTTACGCA GTCAACAG 69189 0.015025 0.000045
8 GTTACGCA ACATGCCA 78820 0.017116 0.000051
8 GTTACGCA CTTCGCAA 67973 0.014761 0.000044
8 GTTACGCA GACGAACT 61960 0.013455 0.000040
8 GTTACGCA TACTGCTC 74403 0.016157 0.000048
8 AGCGTGTT CCAACTTC 98539 0.021398 0.000064
8 AGCGTGTT GTGGTATG 105338 0.022875 0.000068
8 AGCGTGTT GTCAACAG 106348 0.023094 0.000069
8 AGCGTGTT ACATGCCA 94753 0.020576 0.000061
8 AGCGTGTT ATGGCGAT 98287 0.021344 0.000063
8 AGCGTGTT GACGAACT 72695 0.015786 0.000047
8 AGCGTGTT TACTGCTC 85919 0.018658 0.000055
8 GATCGAGT CCAACTTC 72129 0.015663 0.000047
8 GATCGAGT GTGGTATG 74650 0.016211 0.000048
8 GATCGAGT GTCAACAG 90690 0.019694 0.000059
8 GATCGAGT ACATGCCA 77614 0.016854 0.000050
8 GATCGAGT ATGGCGAT 89758 0.019491 0.000058
8 GATCGAGT CTTCGCAA 67293 0.014613 0.000043
8 GATCGAGT TACTGCTC 74834 0.016251 0.000048
8 ACAGCTCA CCAACTTC 132379 0.028747 0.000085
8 ACAGCTCA GTGGTATG 53320 0.011579 0.000034
8 ACAGCTCA GTCAACAG 65130 0.014143 0.000042
8 ACAGCTCA ACATGCCA 74402 0.016157 0.000048
8 ACAGCTCA ATGGCGAT 68364 0.014846 0.000044
8 ACAGCTCA CTTCGCAA 65371 0.014196 0.000042
8 ACAGCTCA GACGAACT 54115 0.011751 0.000035
65 rows