fetal_AF_20_full_basic_stats.tsv

Filename: fetal_AF_20_full_basic_stats.tsv
Full Path: s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/qc/fetal_AF_20_full_basic_stats.tsv
Size: 1.4 KB
Workflow Run: lcvs-exp2-1
Published: Jan 30, 2026 3:37 PM

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
fetal_AF_20.md	2937805502	8140972	0.002771	733410305	0.750354	362582538	0.649754	0.339146	0.741336	0.258664	155	173	193	274184100	0.756198	203262604	70921496	476536063	248733270	177.988732	25.318995	2204395197	0.984206	0.949977	0.949977	421871692320	xgen-exome-research-panel-v2-targets-hg38.bed	935978	0.094547	0.0	0.359884	0.242212	0.586333	0.708325	0.740641	0.817556	0.90225	0.94802	1.007859	1.070417	1.09366	1.113979	1.073318	1.055652	0.940538	0.67724	0.380911	0.0	0.171427	0.0	795.133841	0.175088	24672.0	321.0	466.0	797.0	1028.0	1623.0	0.002316	0.27781	33915118	33873311	0.998916	0.997684	33951930	0.2045	5447	-304931.9831	249509.5207	34156490

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