fetal_AF_5_basic_stats.tsv - Workflow Tracker

Filename: fetal_AF_5_basic_stats.tsv
Full Path: s3://natera-platform-sandbox/users/pgrauman/daq-outputs/20251223_LH00166_0225_A237FK3LT3/output/qc/fetal_AF_5_basic_stats.tsv
Size: 1.4 KB
Workflow Run: lcvs-exp2-1
Published: Jan 30, 2026 3:48 PM

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
fetal_AF_5.md	2880619670	7594619	0.002636	709857421	0.753575	351079447	0.644681	0.34462	0.731116	0.268884	154	172	191	265584004	0.756478	194172690	71411314	457631819	244630983	174.866662	23.785982	2170762249	0.98385	0.948546	0.948546	413715607344	xgen-exome-research-panel-v2-targets-hg38.bed	933464	0.102787	0.0	0.425902	0.254531	0.615698	0.726706	0.769136	0.840213	0.917622	0.957647	1.008731	1.061888	1.075004	1.10059	1.060363	1.054736	0.922736	0.672457	0.405309	0.0	0.164196	0.0	757.321224	0.170364	20521.0	304.0	442.0	758.0	980.0	1561.0	0.002475	0.34796	33914738	33867906	0.998905	0.997525	33951930	0.0699	5571	-132340.9669	56934.1745	34156490

2 rows