Tasks
Actions
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume d1dfadf8-5160-4b6e-8a50-e2e343de98c5 -name magical_heisenberg
Error Report
Error executing process > 'MARKDUPLICATES (1)'
Caused by:
No such variable: id -- Check script 'modules/local/markduplicates/main.nf' at line: 44
Source block:
def prefix = task.ext.prefix ?: "${meta.id}.md"
"""
touch ${prefix}.bam
touch ${prefix}.bam.bai
touch ${prefix}.metrics
cat <<-END_VERSIONS > versions.yml
"${task.process}":
gatk4: 4.5.0.0
samtools: 1.19.2
END_VERSIONS
"""
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- d1dfadf8-5160-4b6e-8a50-e2e343de98c5
- Source
- /Users/abshah/src/daq/modules/local/markduplicates/run.nf
- Work Dir
- /Users/abshah/src/daq/work
- Output Dir
- /Users/abshah/src/daq/results/markdup_test
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- computing…
- Started
- Jan 16, 2026 3:40 PM
- Completed
- Jan 16, 2026 3:40 PM
- Duration
- 0s
- Exit Status
- -