succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 86% 81.3 KB 2.2 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 17s 15s 0s 1s 18.5 MB 99% 2.0 MB 1.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_dLs-N1-BDNA-1_B23MHTGLT4_1) 3m 2s 4s - - 14.8 MB 97% 5.5 MB 111.2 KB 5.2 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_drc-N1-BDNA-1_B23L5TMLT4_1) 2m 7s 3s - - 14.0 MB 91% 5.2 MB 110.8 KB 4.9 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_dLs-T1-TDNA-1_B23KCHGLT4_1) 5m 44s 4s - - 14.6 MB 91% 6.4 MB 112.1 KB 6.2 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_drc-T1-TDNA-1_B23MHVMLT4_1) 9m 12s 4s - - 14.5 MB 97% 7.3 MB 112.7 KB 7.1 MB 120.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_dLs-T1-TDNA-1_B23KCHGLT4_1_vs_659_dLs-N1-BDNA-1_B23MHTGLT4_1) 6s 2s 1s 2s 59.3 MB 100% 10.6 MB 2.8 MB 0 bytes 2.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_drc-T1-TDNA-1_B23MHVMLT4_1_vs_659_drc-N1-BDNA-1_B23L5TMLT4_1) 8s 2s 3s 2s 59.3 MB 100% 13.0 MB 5.0 MB 0 bytes 5.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_dLs-T1-TDNA-1_B23KCHGLT4_1_vs_659_dLs-N1-BDNA-1_B23MHTGLT4_1) 54m 0s 5s 47m 29s 6m 25s 2.2 GB 1354% 2.2 TB 204.4 MB 204.8 GB 181.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_drc-T1-TDNA-1_B23MHVMLT4_1_vs_659_drc-N1-BDNA-1_B23L5TMLT4_1) 2h 6m 6s 1h 56m 9m 58s 2.4 GB 1378% 5.4 TB 444.4 MB 431.8 GB 378.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_dLs-T1-TDNA-1_B23KCHGLT4_1_vs_659_dLs-N1-BDNA-1_B23MHTGLT4_1) 11s 4s 3s 3s 209.5 MB 935% 183.3 MB 2.8 MB 0 bytes 2.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_drc-T1-TDNA-1_B23MHVMLT4_1_vs_659_drc-N1-BDNA-1_B23L5TMLT4_1) 11s 3s 3s 4s 250.6 MB 918% 186.0 MB 5.0 MB 0 bytes 5.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_dLs-N1-BDNA-1_B23MHTGLT4_1) 21s 20s 0s 0s 13.0 MB 105% 5.0 MB 446 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_dLs-T1-TDNA-1_B23KCHGLT4_1) 16s 14s 0s 1s 12.9 MB 112% 6.0 MB 457 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_drc-N1-BDNA-1_B23L5TMLT4_1) 21s 19s 0s 1s 12.9 MB 97% 4.8 MB 444 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_drc-T1-TDNA-1_B23MHVMLT4_1) 21s 20s 0s 0s 13.0 MB 104% 6.9 MB 448 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv) 16s 14s 0s 1s 17.9 MB 94% 1.7 MB 472 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (659_dLs-T1-TDNA-1_B23KCHGLT4_1_vs_659_dLs-N1-BDNA-1_B23MHTGLT4_1;manta_fusion) 4s 3s - - 20.7 MB 5079% 409.1 KB 3.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (659_drc-T1-TDNA-1_B23MHVMLT4_1_vs_659_drc-N1-BDNA-1_B23L5TMLT4_1;manta_fusion) 5s 3s - - 21.0 MB 6326% 656.8 KB 4.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:UNZIP_ALLELES (G1000_alleles_hg38.zip) 4s 2s - - 10.8 MB 98% 9.9 MB 30.0 MB 0 bytes 30.0 MB 1
23 items found |
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