[W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: 1173_DXK-T1-TDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai [W::hts_idx_load3] The index file is older than the data file: normal/1173_DXK-N1-BDNA-01_B23T7FYLT4_1.recalibrated.bam.bai /usr/local/lib/python3.11/site-packages/main/evaluate_sample.py:47: UserWarning: Sample name '1173_DXK-T1-TDNA-01_B23T7FYLT4_1_vs_1173_DXK-N1-BDNA-01_B23T7FYLT4_1' has multiple '_' characters; cannot split into tumor/normal IDs. Reporting full name as tumor ID. warnings.warn(