.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1_vs_1173_HOB-N1-BDNA-01_B23L5TMLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/e91043ec676e2af6832ae9c42ef2b5/.command.err
Size: 4.1 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1_vs_1173_HOB-N1-BDNA-01_B23L5TMLT4_1)
Attempt

Content

[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/1173_HOB-N1-BDNA-01_B23L5TMLT4_1.recalibrated.bam.bai
/usr/local/lib/python3.11/site-packages/main/evaluate_sample.py:47: UserWarning: Sample name '1173_HOB-T1-TDNA-SLD-01_A23T7FVLT4_1_vs_1173_HOB-N1-BDNA-01_B23L5TMLT4_1' has multiple '_' characters; cannot split into tumor/normal IDs. Reporting full name as tumor ID.
  warnings.warn(