File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/e4b9a6371f29edf45700523de8fb58/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_3OH-T1-TDNA-1_B23FC2GLT4_s10)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251222_LH00527_0043_B23FC2GLT4__5d8e7d70--20260228-200340/alignments/recalibrated/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/e4b9a6371f29edf45700523de8fb58/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/e4b9a6371f29edf45700523de8fb58/.command.run
ERROR "ls s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251222_LH00527_0043_B23FC2GLT4__5d8e7d70--20260228-200340/alignments/recalibrated/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251222_LH00527_0043_B23FC2GLT4__5d8e7d70--20260228-200340/alignments/recalibrated/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10/1029_3OH-T1-TDNA-1_B23FC2GLT4_s10.recalibrated.bam.bai 1029_3OH-T1-TDNA-1_B23FC2GLT4_s10.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: QRM4WYABZQZ9N21Q, host id: uqx31iy3A5gEOMs3dxY+AxHud3QLTVU7CJbtMWBLhoDvKBmfs39hIZSNPzhf96/jFvl+MtLSSYPFsWKcLJwCrpBxNB1T+dF5REKVY22/i5o=