File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/6c3d023369f31d9d9276ea397bd55e/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_BJH0-T1-TDNA-1_B23K7YCLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/6c3d023369f31d9d9276ea397bd55e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/6c3d023369f31d9d9276ea397bd55e/.command.run
ERROR "ls s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai 1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: VHYW74A686TQZWMN, host id: u0ipvajhrscbtd5O+TwDQsJhiI+Qz5ms/xwbb3j6L/GZiVOiHnxRFb/VGkoUED+AUpu3nxcvkAo=