.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_BJH0-T1-TDNA-1_B23K7YCLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/2e9d690488d1d1924b1717d1744bff/.command.log
Size: 1.2 KB
Task: NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (1029_BJH0-T1-TDNA-1_B23K7YCLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/2e9d690488d1d1924b1717d1744bff/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/2e9d690488d1d1924b1717d1744bff/.command.run
ERROR "ls s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai": no object found
ERROR "cp s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1/1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai 1029_BJH0-T1-TDNA-1_B23K7YCLT4_1.recalibrated.bam.bai": NoSuchKey: The specified key does not exist. status code: 404, request id: PPRJMT4HEGQJHKGJ, host id: CDcf2evOXELaIJLowKc+6HkzWmX79cRqZE7YAVh0RVw3jRMQw2VTfPvQhIjC0kMazVXX2H/qYFfFsSLboBJnhrHOLetI/msU