.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_2LI-T1-TDNA-1_B23K7YCLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/9c8e4888d210dda9418f1a183dea50/.command.log
Size: 918 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_2LI-T1-TDNA-1_B23K7YCLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_2LI-T1-TDNA-1_23K7YCLT4_1/1029_2LI-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/9c8e4888d210dda9418f1a183dea50/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/9c8e4888d210dda9418f1a183dea50/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_2LI-T1-TDNA-1_23K7YCLT4_1/1029_2LI-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam
==> STAGING COMPLETE (5 inputs)