.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_1O-T1-TDNA-1_B23MMVMLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/0d9801290cb1e39b1d197198ebd768/.command.log
Size: 918 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_1O-T1-TDNA-1_B23MMVMLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260313_LH00527_0062_B23MMVMLT4__5d7f62c6--20260315-091014/alignments/recalibrated/1029_1O-T1-TDNA-1_B23MMVMLT4_1/1029_1O-T1-TDNA-1_B23MMVMLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/0d9801290cb1e39b1d197198ebd768/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260313_LH00527_0062_B23MMVMLT4__5d7f62c6--20260315-091014/alignments/recalibrated/1029_1O-T1-TDNA-1_B23MMVMLT4_1/1029_1O-T1-TDNA-1_B23MMVMLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/0d9801290cb1e39b1d197198ebd768/.command.run
==> STAGING COMPLETE (5 inputs)