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AI-generated troubleshooting analysis is available in the AI Analysis tab.
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume 5328a528-d284-470c-ba05-a81315c1e09d -name mimsi-tso500dna-specimens-20260522-125833
Error Report
Error executing process > 'NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (1241_BV8U-T1-TDNA-1_B23NN7CLT4_1)'
Caused by:
K8s Job nf-47eeb9ab12391291eff7aafdc73b1061-ecb28 execution failed - reason: BackoffLimitExceeded - message: Job has reached the specified backoff limit
Command executed:
mosdepth \
--threads 4 \
--by xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed \
--fasta Homo_sapiens_assembly38.fasta \
\
1241_BV8U-T1-TDNA-1_B23NN7CLT4_1 \
1241_BV8U-T1-TDNA-1_B23NN7CLT4_1.recalibrated.bam
cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH":
mosdepth: $(mosdepth --version 2>&1 | sed 's/^.*mosdepth //; s/ .*$//')
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/eeb9ab12391291eff7aafdc73b1061
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mosdepth:0.3.8--hd299d5a_0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 5328a528-d284-470c-ba05-a81315c1e09d
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- s3://natera-platform-sandbox/platform-users/mohsen/msi/mimsi_outputs/mimsi_run__20260522-125833
- Submitted By
- mbotlaniesfahani
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $96.28
- Outputs
- 519.8 GB
- Started
- May 22, 2026 5:59 AM
- Completed
- May 22, 2026 10:47 AM
- Duration
- 4h 47m
- Post-workflow Transfer
- 5s
- Exit Status
- -
- Peak Tasks / CPU / Mem
- 502 / 1,738 / 2.6 TB